| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2504 |
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| Symbol | |
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| ID | 5610457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3047836 |
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| End bp | 3048615 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933425 |
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| Product | uridine phosphorylase |
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| Protein accession | YP_001474241 |
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| Protein GI | 157375641 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG2820] Uridine phosphorylase |
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| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD)
[TIGR01718] uridine phosphorylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.568287 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.357218 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAGTCG TTAATAAAAG CGAAAGAACC AATGGAATAA AACAGTATCA TATCGGCATG
GTTGAGGGAG ATGTCGCAGA ATATGTTCTT CTGCCGGGAG ACCCATTCAG AACAGACATC
ATCGCCAAAT ATATGGATGA CGTAGAGTTG GTCGCTCATA AGCGTGAACA TAAGACCTAT
ACCGGTTACT ACAAGGGGGT CAGAGTATCG GTGACATCGA CTGGCATGGG CTGCCCATCT
ACCGCTATCG CTGCTGAAGA GCTGGCTAAC ATTGGCGCCA AGGTATTCAT CCGTTTGGGA
AGCTGCGCAG CCTTGCAAGA CGATATCAAT ATCGGCGATC TAGTTATCAC CACCGCAGCG
ATGAAGAATG AGGGGACATC AAAATTCTAT GTACCCGACA ACTTACCGGC CGTCGCCGAT
CTTGAGGTCA CATCCGAGCT AATTCGCGTC GCTAAAGAGA TGTCGAACGG TGATGACTAT
CAGGTTCACT GGGGGATCAG CTCAACCGAT GACTCATTTT ACGGTGAGAC CCCTGAATGG
ATCCAGAAGC TTATCGATCT GAATTTGAAG AATATTGAGA TGGAAGCATC GGCGCTATTT
ACCGTCTGTC ACCGTCGAGG TTTAAAAGGC GCAACCATCT GTGCGGTCGC CGCGAACCAT
AAACGAGGCG AAAATTTTTG GGGTAAGCGA AATATTCTGC TCGAACAAGG TATCGAGAAG
GAGACAGAGG TAGCTTTGGA GGCTATCTAT CGCTTCCATC ACGGAAAAAA TCTATTTTAA
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| Protein sequence | MSVVNKSERT NGIKQYHIGM VEGDVAEYVL LPGDPFRTDI IAKYMDDVEL VAHKREHKTY
TGYYKGVRVS VTSTGMGCPS TAIAAEELAN IGAKVFIRLG SCAALQDDIN IGDLVITTAA
MKNEGTSKFY VPDNLPAVAD LEVTSELIRV AKEMSNGDDY QVHWGISSTD DSFYGETPEW
IQKLIDLNLK NIEMEASALF TVCHRRGLKG ATICAVAANH KRGENFWGKR NILLEQGIEK
ETEVALEAIY RFHHGKNLF
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