| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2503 |
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| Symbol | |
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| ID | 5612553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3046505 |
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| End bp | 3047452 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933424 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001474240 |
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| Protein GI | 157375640 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.464672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.275989 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGACG GTCTGCAACA TGAAGCCTAC CAAATGGTCC TATTTAATGC CTTAGCGACC
ACAGGTAGTC TCACTAAGGC TGCTGAGAGA CTCGAAGTCT CTGTATCTCA CGTCAGTAAG
CAACTGCATA TTCTGGAAGA TAAGCTTAAC GTTCAACTCA TCAATCGCAG TACCCGAAGC
CTGGCACTGA CTCAAGAAGG CAAAGACTTT GCCGATTATT GTGACCAGAT AGTGGGTTTG
ATCCATAGCG CCAACACGCT GATGACAGAT TCCAGAGATG AGGTTTCCGG AAACGTTCGA
CTGGCACTCT CCTGCTCATT TGGCACCCTG CACGTGTTAC CGGCATTAGA CGCGCTTCAG
AAAAAATATC CCTCACTCAC CACCGAAGTT AGCCTGTTTG ACTATAAGGT CGACATGTTG
GAGGAGGAGA TAGACCTATG GTTCACCACT TTCGAAGAGA TAAATGCCGG TTATGTGGCC
CAAAGAATCG TCGATACCCA CTTCATTCTG TTGGCATCCC CTGACTACAT ACAGGTACAT
GGTGCGCCAA CACACCCAGA CGATTTAAAA GCGCATAACT GCGTCACCTA CCACAGCAAA
AATCGCAGCT ACACCCATTG GTTATTTGCA AAAGATGAAG AACAGCTTGA TGTACAAGTC
TCAGGTAATT ATCGGGTAGA TAAGGCCGAA GCCATTCGTG ACGCCGTTCT GGCGGGCAGA
GGCATAGGCT ATATAGCCAC TTATCTGTTA ACCGATGAGC TGGAGAGTGG AAAACTCATT
CCGCTGATGT CAGACTGGAA ACCCACGCAA AAGATGCCTG TCTATGCCGT TTACCCGAAA
TACCAAAACC TCCCGGTTCG ACTGAAAACC ATCATAGATT TTGTTAAACA GGTCATAGGA
CAACCGCCCT ACTGGGACAA CAACTTATCC AAATGGCTTA AGGATTAG
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| Protein sequence | MKDGLQHEAY QMVLFNALAT TGSLTKAAER LEVSVSHVSK QLHILEDKLN VQLINRSTRS
LALTQEGKDF ADYCDQIVGL IHSANTLMTD SRDEVSGNVR LALSCSFGTL HVLPALDALQ
KKYPSLTTEV SLFDYKVDML EEEIDLWFTT FEEINAGYVA QRIVDTHFIL LASPDYIQVH
GAPTHPDDLK AHNCVTYHSK NRSYTHWLFA KDEEQLDVQV SGNYRVDKAE AIRDAVLAGR
GIGYIATYLL TDELESGKLI PLMSDWKPTQ KMPVYAVYPK YQNLPVRLKT IIDFVKQVIG
QPPYWDNNLS KWLKD
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