| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2498 |
|---|
| Symbol | |
|---|
| ID | 5611353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3039534 |
|---|
| End bp | 3040691 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640933419 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_001474235 |
|---|
| Protein GI | 157375635 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0428857 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.830123 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCGTT CGCCTGTTCC CCTCATCACT CTCACCCTCT TTAGCCTGCT ATTCTCCGCG
TCCGGTGAGG CTAAATCCCA ATATCAGGGG ATAAGTGATG ACTTTAAAAC TCTGTTTCAT
TCTAAGTTGA AAAAAAATAA AGTGCCCGGT GGCGCCTTCG TCATTATTGA AGACGATGCC
ATTTTAAAGT TAAGCACCTA CGGCAAGAGA GAGAAAGGAG GCAAACTCAA CGTCAACTCC
AACACCGTCT TTCGACTGGC GTCGGTATCT AAAACCTTTG CCGGTTCTCT GGCCACTATG
CTGGTACACG AAAATCGATT TAGCTGGGAC GATCCGTTAA CTCAATATAT GCCCGACTTC
AGCCTGGCCG ATCCCGTCGC CTCGAGACAG ATCAACTTAG GCCACCTGAT AGGCCAAAGT
ACCGGATTAA TGCCGAACAG CTACGACAAT ATCCTCAACG CTAATCGTAA ACTCGAAAAA
ATCATCCCAA AATTTTCCAA GTTAGAACCT ATGTGCTCTC CTGGTAAATG TTACAGCTAT
CAGAACATCG CCTTCTCATT TATCCAACCA GTCATCGAAC AACAAACCGG GAGTGAGTAC
GCCGATTTAG TGACAGAGCG GATATTTACC CCCCTTAAGA TGACCTCTGC CTCTGTCGGC
ATGGACAAGT TTCTCGCCAC CGATAACCGT GCGAAGCCAC ATGTTAAGAC CCGCTCCGGG
TTTAGAAAGG TCAAAGTTAA ACCTAACTAC TATCAGGTGG AACCCGCCGC AGGGGTTAAC
GCCAGTATTC TCGACATCTC TAAATGGTTA ATCGCAAACT TGGGCAATAA CCCTGACGTT
CTCAGCCCAA GACTATTAGC GGAGATAAAA ACCCCCGGAG TTCGCACCAG CAAAGAGTTA
AGACGTCGCG CCTGGAAGAA CTATCTCAAT AACGCCCACT ACGGTAAAGG TTGGCGGGTA
TATGATTTTG AGGGAGAGGA GCTCGTTTAT CACGCCGGTT GGGTGGCAGG TTATGTGGCA
GAAGTCGCCT ACTCTCCTCG TCTGAAGATC GGTATGGCCA TGCTACTCAA CGGTGAATCC
CGGGTTATCG GCGAGTTAGG TGCCAGTTTC TGGCATAGCG TGATGAAACA GCAAGCCACA
TTGACTGCTA AGAAATAA
|
|---|
| Protein sequence | MFRSPVPLIT LTLFSLLFSA SGEAKSQYQG ISDDFKTLFH SKLKKNKVPG GAFVIIEDDA
ILKLSTYGKR EKGGKLNVNS NTVFRLASVS KTFAGSLATM LVHENRFSWD DPLTQYMPDF
SLADPVASRQ INLGHLIGQS TGLMPNSYDN ILNANRKLEK IIPKFSKLEP MCSPGKCYSY
QNIAFSFIQP VIEQQTGSEY ADLVTERIFT PLKMTSASVG MDKFLATDNR AKPHVKTRSG
FRKVKVKPNY YQVEPAAGVN ASILDISKWL IANLGNNPDV LSPRLLAEIK TPGVRTSKEL
RRRAWKNYLN NAHYGKGWRV YDFEGEELVY HAGWVAGYVA EVAYSPRLKI GMAMLLNGES
RVIGELGASF WHSVMKQQAT LTAKK
|
|---|
| |