| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2496 |
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| Symbol | |
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| ID | 5611351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3037161 |
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| End bp | 3038396 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933417 |
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| Product | cystathionine beta-lyase |
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| Protein accession | YP_001474233 |
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| Protein GI | 157375633 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.654385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.454177 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAGAT GGCTAAACAA CAATTCAATC CTCTTCGGTT GTGGACAGTA CCTTATGAAA
AAAGAGACAC AGATAATCAG TACCGGTCGA GATAAAAAAT GGACCAAAGG CGTCATTAAT
CCTCCTGTAT TTCGAGCTTC GACCATGGTT TTCGACACTA TGGATGAGAT GCGTTTCGCC
ATCAAGAACC GGGCCAATGG AGAGATGTTC TATGGCAGAC GCGGCGGGCC GACCCACTTT
GCTTTTCAGG CCGCCATCGC CGAACTTGAG GGTGGTGTAG GGACCGCACT ATATCCGTCG
GGATCGGCCG CCATCAGCGG TGCCCTGCTC TCATTTTTAA AAGCCGGCGA TCACCTGCTA
ATGGTCGATA GCGCCTATGA ACCCACCCGG GATCTGTGCA ATAAATTGCT TGCGGGGTTC
GGTATCGAGA CCACCTACTA CGATCCTATG ATTGGTGCCG GCATTAGCGA ACTCATCAGG
CCAAACACTA AGGTGTTGTT TCTCGAATCT CCAGGCTCCA TCACCATGGA AGTTCAGGAT
GTACCCACAC TGAGTGAAAT TGCTCACAAG CACGATATCG TCGTCATGCT GGATAACACC
TGGGCTTCCC CCATTAACTC GCGACCCTTC GACATGGGCG TCGATATCTC AATTCAGGCC
GCCACTAAAT ATATTGTCGG ACATTCGGAT GTCATGATGG GTACCGCGAC ATCCAATGAA
GCTCACTGGG ATCAACTGAG AGAAAATAGT TACCTGATGG GGCAATGCAC CTCACCCGAT
GATGTCTACC TGGCTAATCG GGGTCTGAGA ACATTAGGTG TGCGTATGCA GCAACATGAG
CAGAATGCGC TTAAAGTTGC CAACTGGTTA GCCACTCGTC CCGAGGTCGA TCATATAAGG
CATCCGGCAT TCGACACCTG TCCCGGCCAT CAGTTTTTTA AACGCGATTT CAGCGCCTCG
AATGGCCTGT TCTCCTTTGT GCTCAAAGAG GGCGACCTGA ACTCAGTCAC TGCACTGGTC
GAAAATATGC ACCACTTCAA GATGGGCTTC TCCTGGGGTG GATTTGAGAG CCTGATCTTA
GGGGTATTTG GCATCGATAA GTTAAGAACC GCCACCAAAT GGGATAGCAG TAAACCTCTG
ATACGTCTGC ATATCGGGCT GGAAAACCCC GACGATCTTA TTGCCGATCT GGAAGCAGGA
TTCGAGCGGT TCAATGCCGC TCTCAATAAG CGATAG
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| Protein sequence | MLRWLNNNSI LFGCGQYLMK KETQIISTGR DKKWTKGVIN PPVFRASTMV FDTMDEMRFA
IKNRANGEMF YGRRGGPTHF AFQAAIAELE GGVGTALYPS GSAAISGALL SFLKAGDHLL
MVDSAYEPTR DLCNKLLAGF GIETTYYDPM IGAGISELIR PNTKVLFLES PGSITMEVQD
VPTLSEIAHK HDIVVMLDNT WASPINSRPF DMGVDISIQA ATKYIVGHSD VMMGTATSNE
AHWDQLRENS YLMGQCTSPD DVYLANRGLR TLGVRMQQHE QNALKVANWL ATRPEVDHIR
HPAFDTCPGH QFFKRDFSAS NGLFSFVLKE GDLNSVTALV ENMHHFKMGF SWGGFESLIL
GVFGIDKLRT ATKWDSSKPL IRLHIGLENP DDLIADLEAG FERFNAALNK R
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