| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2495 |
|---|
| Symbol | |
|---|
| ID | 5609897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3034873 |
|---|
| End bp | 3037089 |
|---|
| Gene Length | 2217 bp |
|---|
| Protein Length | 738 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640933416 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001474232 |
|---|
| Protein GI | 157375632 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.33918 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.73238 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAACC TCCCTGTAGG CCTTCGAACC AAGGTTGCGG TCCTCTCCCT TTTTCTGCTC
TGCCTTCCCT GGCTGGGCTA CCAATATGTA TGGGAGATGG AGAAGTACCT GAGACACGGA
CAGGAAAAAA CCCTCGAAGG CACGACACAG GCGCTGGCGA CCGCCCTGCA TGAGAGGCCA
AAACTTTTTG ACAGTCAGGC GAGCTTTTTA ACTCAGGTTC AACAGGGGCG GGATCTCTAT
GCCTATCCAC TGGCTGGCCC GATCCAGCTC GATGGTAAGT TGTCAGATTG GGCTCCCTAT
CGTCATAAAA GCATCGAGTA TGGTAAAAAC CATCAGATAT TTAAAGCCGA TCCTAATACT
CCCTTAACCG TCAGCTTTAC CCATATGGTG GGTAAGTATT CGGGTTACCT TTATAGCTTC
TTCGAGGTCA CAGATCCCAA TGTCGTCTAT CGCGGCAAAA ACACATTACG AATCGATCAG
AACGATCACC TCACCATAGC CACACTCGCC CCCGACGGTG TATTTAAACG TTACATCATA
TCGACCATTA AGGACGGTTG GATCAGCGCC TTCGAGTTAC CCGAAGACCC CTCCCTCAGC
ACGCCGGTCA AACCTGAGAT TCAGATTCAG GGTAAATGGA AAAAGACCAA ACAGGGCTAT
AATGTCGAAC TGCGAATGCC TCTGGATATG GTTGGCAGTA AGCTAGGGTT TGCGATACAC
GATGTGAATA ATCTCAAGAG CCGCAGACTC GATGCCGTCG TCGGCACATC GGCTATCGAT
GATGTAGATA AACTCGGCAC AGTGCTGGTT CCCTCTCCCG AAATTGAAGG CATCATCAAG
GGAATGAGCC ATAACAGCTC TCGGATCTGG GTGGTCGATA AACATGGACG CGTATTAGCC
AAATCCGGTG ATATACGCAA CGGTAGCAGT GTTTGGACCC GGACGGTGAC AGAGGCGCCG
GATCCCTCAT TTTGGGGGCA ATTTAAGCAC AATGTCCTGA CCCCTTTTTA TTACAAGATA
TTGACGACGC CTCCTAAAGA TTTTATCGAC TCACTGCAGG ATTCAACTGT ATTAGAAGGT
AGCCATATCC AGCGAGCACT GTCCGGAAAG CAGGGTTCGA CCTGGCGACT AACCCCGGAC
AACAAGGCCG TGATCCTCGC CGCTGCCAGC CCGATCTGGA TCGACGATAA GGTGATGGGT
GTGGTGATCT CTGAAGAGAC CACCCACGGC ATACGCACAC TTAGGAACAA GGCCTTAGAG
AAACTGTTCA ACGTCATATT AACGGTCATG AGCATGGGTA CCTTAGCCCT GTTCTTCTTC
GCTTCCAGCA TCTCGAGCCG TATTCGTAAA CTCAGAGATG AAGCCGAACG CGCCATCGAC
AGCCAGGGAC GGATAAGAAA CCATATCCAA GGTTCGAAAG TACGTGACGA AATAGGCGAT
CTCTCCAGAA GTTTCGCCAG TATCGTGAGT CGCTTAGGCC TATATACCCA TTACCTTGAG
AATATGTCGT CCAGACTATC CCATGAGTTA AGAACGCCTG TCGCCGTGGT TCGCTCATCA
CTGGAACACT TAGGCTTGCA ACAACTGGAC AAGGATAGCC GCAAATATGT TGACCGAGCT
CAGGAGGGGG TAAGTCGTTT GAGCATGATC CTCAATAATA TGAGTGAGGC GACACGATTA
GAAGAGAGTC TTTCCAAGGC CGAAATGGAC ATATTCCCAC TGTCGAAAGT GGTAAACGGC
TGCATGCAAG GATATCAGCT GACCTATCCC CAGCAGGAAT TTATCCTCTC CATCCCCGAT
GAACCATTAA ATATGAGTGG GGTTCCCGAA TATATCGCCC AACTGATGGA TAAACTGATT
GCCAACGCAC TTGAATTTAG TCTTCCGGGT ACGGCGATTA CGGTTTCACT CGAAGTTAAA
CAGAGGCAGG CGGAGCTTAG CATCAGTAAT TTCGGGCCTG AGTTGCCCGA TAAAATGAGC
GAGCAGATCT TTGAATCTAT GGTCTCTGTG CGGGCGCAAA AAGCACAAGA CAAGCCACAT
CTTGGTTTAG GTCTGTATAT CGCAAGGCTA ATCACAGAGT TCCATCAGGG CAGTATTGTG
GCTACAAATA TTTCGACGAG TAGCGAGTCG ATAAAAGACA ATGAACCGAG TCGTGTTCAA
GACCCTGGCC ACTCTGGTGT CACCATCTGT GTCACCCTAC CGCTTTGCAA AGAGTAA
|
|---|
| Protein sequence | MFNLPVGLRT KVAVLSLFLL CLPWLGYQYV WEMEKYLRHG QEKTLEGTTQ ALATALHERP
KLFDSQASFL TQVQQGRDLY AYPLAGPIQL DGKLSDWAPY RHKSIEYGKN HQIFKADPNT
PLTVSFTHMV GKYSGYLYSF FEVTDPNVVY RGKNTLRIDQ NDHLTIATLA PDGVFKRYII
STIKDGWISA FELPEDPSLS TPVKPEIQIQ GKWKKTKQGY NVELRMPLDM VGSKLGFAIH
DVNNLKSRRL DAVVGTSAID DVDKLGTVLV PSPEIEGIIK GMSHNSSRIW VVDKHGRVLA
KSGDIRNGSS VWTRTVTEAP DPSFWGQFKH NVLTPFYYKI LTTPPKDFID SLQDSTVLEG
SHIQRALSGK QGSTWRLTPD NKAVILAAAS PIWIDDKVMG VVISEETTHG IRTLRNKALE
KLFNVILTVM SMGTLALFFF ASSISSRIRK LRDEAERAID SQGRIRNHIQ GSKVRDEIGD
LSRSFASIVS RLGLYTHYLE NMSSRLSHEL RTPVAVVRSS LEHLGLQQLD KDSRKYVDRA
QEGVSRLSMI LNNMSEATRL EESLSKAEMD IFPLSKVVNG CMQGYQLTYP QQEFILSIPD
EPLNMSGVPE YIAQLMDKLI ANALEFSLPG TAITVSLEVK QRQAELSISN FGPELPDKMS
EQIFESMVSV RAQKAQDKPH LGLGLYIARL ITEFHQGSIV ATNISTSSES IKDNEPSRVQ
DPGHSGVTIC VTLPLCKE
|
|---|
| |