| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2494 |
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| Symbol | |
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| ID | 5609896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3034098 |
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| End bp | 3034796 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933415 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001474231 |
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| Protein GI | 157375631 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00298377 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.523068 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAATCA AACGTATTGC GATCGTAGAA GATGAAGCGG CTATCCGGGA GAATTATAAA
GAGGTGCTGC AACAGCAAGG CTACAGTGTG CAAGCCTATC CCAACCGCCC CACTGCCATG
CAGGCATTTT GTACCCGATT GCCGGATCTT GCGATTATCG ATATCGGACT CGAGGATGAA
ATCGACGGCG GGTTCACCCT GTGTCAATCT CTGCGAGCCC TGTCCAGTAA TCTGCCTATC
ATCTTCTTAA CGGCCAGAGA CAGTGACTTC GATACCGTGT GTGGCCTTCG TCTTGGCGCC
GATGATTACT TGAGTAAAGA CGTCAGTTTC CCGCACCTAA TTGCCAGACT TGCGGCTCTT
TTCAGACGCT CAGATCTTCA AGATGCTGCT CAGTCAGATG ACAATTTACT CGAAAGAGAT
GCATTGACCA TAGACGCTAA CCGCATGCAA GTTTACTGGA ATAACGTGCC AATCGAACTC
ACAGTCACCG AATTTTGGAT GGTTCATGCC CTCGCAAAGC GACCCGGTCA TGTTAAAAAC
CGTCAGGAGT TGATGCAGGA GGCGAAAATA TTCGTCGATG ACAGCACCAT CACCTCCCAT
GTGAAGCGGA TCCGAAAAAA ATTCGTGGCT CAAGATGAGA AATTTGATTG CATAGATACC
GTTTACGGCA TGGGTTATCG CTGGGATCCC CAGGGGTAA
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| Protein sequence | MSIKRIAIVE DEAAIRENYK EVLQQQGYSV QAYPNRPTAM QAFCTRLPDL AIIDIGLEDE
IDGGFTLCQS LRALSSNLPI IFLTARDSDF DTVCGLRLGA DDYLSKDVSF PHLIARLAAL
FRRSDLQDAA QSDDNLLERD ALTIDANRMQ VYWNNVPIEL TVTEFWMVHA LAKRPGHVKN
RQELMQEAKI FVDDSTITSH VKRIRKKFVA QDEKFDCIDT VYGMGYRWDP QG
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