| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2489 |
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| Symbol | |
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| ID | 5611355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3026220 |
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| End bp | 3028844 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933410 |
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| Product | virulence factor MCE-like protein |
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| Protein accession | YP_001474226 |
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| Protein GI | 157375626 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3008] Paraquat-inducible protein B |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.336956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.349105 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAAA TGGAAACACC TAAAGTCGTA AAAAAGAAGC TATTCTCGCC AATTTGGCTC
TTACCTCTGG TTGCGCTAGC CCTAGGCGGC TGGCTGGGTA TCAAGAGCAT AAAAGAAGCC
GGAATTGAGG TGCAGATACA CTTTCCCAGT GCAACCGGGA TAGATATTGG GAAAACCTTG
GTTCGTTATC AAGGTCTCAC CGTCGGAAAA GTTGTCGATA TCAGTATTGA TGATGATCTA
AAGGGCGTTA ATGTCGACCT TAAGATGGAT TACCGTGCAG GGCCGTTTCT GAACGACGGC
ACTAAGTTCT GGTTAGTTGC CCCTAAAGCC TCAATTACCG GTGTTGAAGG CCTGGATGCA
CTATTTTCCG GAAACTATAT CGCGATTCAA CCCGGTGAGG GAGAGTCACA ATCTTTCTTT
GAAGCTGAAA TCAACGCTCC GGCAGTCCAA CCCGGCACTG ACGGACTAGT CATAGAGTTA
AGCAGCGACA ACTTAGGCTC GTTGGATGTC GGTTCACAGC TTTTTTACCG CCAAATTCCA
GTCGGTCAGG TCACCAGTTA CCGTTTAGAG GGCTCTAAGC GCATATTAAT GACTGCGTTT
GTCAAAAAAC AGTATGCACA TTTGGTTAAA ACAGACTCGC AATTTTGGAA TGTGTCTGGG
ATCAGCATAG ATGCCTCTCT TTCGGGTATC GAGGTAAAGT CTGAAAGCTT GTCGGCAATC
CTTGCCGGAG GACTCAGTTT CAGTTCATCA GATGATGCAC AAGAAGCGGC TAATGGCCAA
AGTTTCCAAA TTTATGACAA TCAGAAGATG GCCCTCGGAG GCGTCGAGCT GACACTTACG
GCAGACAATT CGGAAACGGC AAGTGTTGGC ACTAAGATAG TCTTCAGAGG CATAGAGATC
GGACGAATAA CCCAATCGGA TCTGACCGAC ATCGGTGTTC GATTTAAGGC TAAAGTGGAT
GAAGAGTATG CCCAACTTCT CTCTGCCACA TCCCGGTTCT GGCTGGAAGG GGCAGACCTT
TCGCTATCGG GTATCAAACA TCCTGAGCGG CTCATCACCG GCAGTGTGAT CAAGTTTTCA
CTGGGTACGG GTGATGCCGT TGAGCAATAC ACACTGCTCG ACGAGGCTCC GGATCAAGAT
GCGCTATCCA AGCTGGTATT GACATTAAAT GCAGACACCA ACCCGGGTAT CGGGGCCGAT
GCAGAGGTGC GCTACAAACA GATCCCTATC GGAAAAGTTA ACGCCGTCAA GCTTAATAAA
GCCCTTACGG GTGTCGAATA CCAGATAGAG ATATGGCCGG AGTTTTCGCA ACTTATCACG
GCAAACAGTT ACTTTGTATC AGAGTCAGCC CTGGCAATTG ATGCATCGCT CGATGGTGTC
AGCGTACAGA CCCGGGATTT AACAACTCTG ACTAAGGGCG CTATTAGCCT GGTTCAGGGG
AATAGCAGGA AGAAAGTTAA AAGCGACGCC AAGCTGCCTC TGTTTGGCAC AGACCAAGAT
GCAACAACAT TCTTTGCCAA CCGTAACCTC ACTAAGTTAA GCCTGCTCAG CCCGGATGGT
GCAGATCTTA ATCCTGGCTC TCCGGTCTAT TATAAGAAGA TGCAGATCGG TCGGGTAGAC
AGTATCGATT GGCTTTCAGG TTCCGAGGCA TTTTCTATAA GAGTCAGTAT TCAGAATCAA
TTTAAAACCT TAATTAAGCC CAACAGCGTA TTCTGGCGCA ACAGTGCCAT GTCGGTTAAT
GCTGCGCTTT CCGGGGTAGA AATTGATGTT GCTCCCCTCC AGGGGGCACT GAAAGGCAGT
ATCAGTTTAG GCTTGCTCGA CACCGATGCA AAGGGGAATA AAACCCATCT CTATGGATCA
AAAAAATTGG CCCTGGCTCA GGCTAAAGCC ATCACCCTCA CCTTCCCGGC CGATGTGAAA
TTATCGGCCA AGGCCCCTAT TCGCTACCAG GGTCATCAAG TCGGCGAGAT TGAGCGTGTT
TCCCTTAATA AAGATCTCAC CAGCGTTACT GCCAGTGCTT ACCTTTATGG CGATTACTCG
AAACATTTTA CCCAGGAAGA TGCCCTTTAT TATCTGGTCG ATGCTCAGAT ATCCCTATCG
GGAATTAAGG CACCGGAAAC GATGCTCACG GGGCCCTATG TTGGTGTGAT GCCAGGAGTG
AGTTCTCGAG TCGGTCAAGC GTTTATTGGT GAACTGACAG CTCCTGTGAT AGTTAAGCAT
GATTGGCTTC AATTTACCCT GGAAGATGTC AATCTGGGCT CAGTCAAGGC TGGCACGCCC
ATCATCTTTC GTGGTATCAA AATTGGTGAA GTGGATAGCT ACCTTCTATC AGACACTGGC
AATAGCGTGC GGATGAAGGC TCATATCGAT AAGCAGTATC GTCATTTGGT GAATCAAACG
AGTCAATTCT GGGATCTTTC TGGCGTGAAA GTCGATATAG GATTGTTTTC AGGCGCGCGG
ATAGAAACCG GCTCTCTGGA AACCATCATG GCCGGCGGTA TTGGCGTGGT GACACAGGCG
CAAACCAGCT CTGGCAATCA AGTATCGGCT GACGCGGTAT TTACCTTGCA TAACAAACTT
AACCCTGCAT GGTTATCTTG GGCTCCCATT CAGACAGCCC CGTGA
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| Protein sequence | MTQMETPKVV KKKLFSPIWL LPLVALALGG WLGIKSIKEA GIEVQIHFPS ATGIDIGKTL
VRYQGLTVGK VVDISIDDDL KGVNVDLKMD YRAGPFLNDG TKFWLVAPKA SITGVEGLDA
LFSGNYIAIQ PGEGESQSFF EAEINAPAVQ PGTDGLVIEL SSDNLGSLDV GSQLFYRQIP
VGQVTSYRLE GSKRILMTAF VKKQYAHLVK TDSQFWNVSG ISIDASLSGI EVKSESLSAI
LAGGLSFSSS DDAQEAANGQ SFQIYDNQKM ALGGVELTLT ADNSETASVG TKIVFRGIEI
GRITQSDLTD IGVRFKAKVD EEYAQLLSAT SRFWLEGADL SLSGIKHPER LITGSVIKFS
LGTGDAVEQY TLLDEAPDQD ALSKLVLTLN ADTNPGIGAD AEVRYKQIPI GKVNAVKLNK
ALTGVEYQIE IWPEFSQLIT ANSYFVSESA LAIDASLDGV SVQTRDLTTL TKGAISLVQG
NSRKKVKSDA KLPLFGTDQD ATTFFANRNL TKLSLLSPDG ADLNPGSPVY YKKMQIGRVD
SIDWLSGSEA FSIRVSIQNQ FKTLIKPNSV FWRNSAMSVN AALSGVEIDV APLQGALKGS
ISLGLLDTDA KGNKTHLYGS KKLALAQAKA ITLTFPADVK LSAKAPIRYQ GHQVGEIERV
SLNKDLTSVT ASAYLYGDYS KHFTQEDALY YLVDAQISLS GIKAPETMLT GPYVGVMPGV
SSRVGQAFIG ELTAPVIVKH DWLQFTLEDV NLGSVKAGTP IIFRGIKIGE VDSYLLSDTG
NSVRMKAHID KQYRHLVNQT SQFWDLSGVK VDIGLFSGAR IETGSLETIM AGGIGVVTQA
QTSSGNQVSA DAVFTLHNKL NPAWLSWAPI QTAP
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