Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2482 |
Symbol | pepN |
ID | 5611161 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3018283 |
End bp | 3020850 |
Gene Length | 2568 bp |
Protein Length | 855 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640933403 |
Product | aminopeptidase N |
Protein accession | YP_001474219 |
Protein GI | 157375619 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0308] Aminopeptidase N |
TIGRFAM ID | [TIGR02414] aminopeptidase N, Escherichia coli type |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0279976 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00729308 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAACAA TGAATGCGAA GTACCTGAAG GATTACCTGG CTCCTGCTTT TACCATCACC CATATCGATC TCGACTTCTA TTTGGATGGG GCAGAGACAT TTGTCACGGC GAAAAGTCAG GTTGTACGAA AAGATGACCA AGCGACGACC TTAGTATTAC ACGGTGAAGG TATTGAGATC ATTTCACTTA AAGTCGCTGG TGTTGATACC TGCTATAGCC AGGAAGAGGC AAAACTTAGT ATCGAGACTC AGCTTGAAGA GTTTGAGTTA GAGATAGTAA CAAAACTCGA TCCTGAATCG AATTCAAGCC TCGAAGGACT CTATATGTCT GACGGGGCCT ACTGTACTCA GTGCGAGGCC GAAGGCTTCA GACGTATCAC CTATTTCCTC GACAGACCCG ACGTACTTGC TGTGTACAGT GTGAGAGTTG AAGCAGATGC CAAGGCATTT CCCTACCTTT TGAGCAACGG TAATTTACTG GAGCAGGGCG AGACTTCATC GGGACGTCAT TTTGTTAAAT GGCATGATCC GTTTCCAAAG CCAGCCTATC TGTTTGCCCT GGTCGCAGGA GATTTTGATC TGTTGGAAGA TCAGTTTGTT ACATCAAGCC AACGGCAGAT CAAATTACAG GTCTTTGTCG ATAAAGGTAA CCTTCATAAG GCTCACCATG CAATGGCATC GTTAAAGAAG TCGATGGCTT GGGATGAGTC CAGGTTCGAT CTTGAGTATG ATCTGGATAT ATACATGATT GTGGCGGTCG ATTTCTTCAA TATGGGCGCT ATGGAGAACA AAGGGCTCAA TGTATTCAAT ACCAAATATG TGTTGGCCGA TACGAACTCG GCGACAGATG AGGATTATCA TGGTATCGAG TCGGTGGTGG GGCATGAGTA TTTCCACAAC TGGACAGGAA ACAGGGTGAC CTGCAGAGAT TGGTTTCAAC TGAGTCTTAA AGAAGGGTTA ACCGTATTTA GAGATCAAGA GTTCAGCTCA GATCTCGGCT CTCGTGCGGT TAATCGTATT CATGCCATTA AGGTGATAAA AAATCAGCAG TTCGCCGAAG ATTCAGGACC CATGGCGCAT CCTATACGCC CTGAGTCTGT GATCGAGATG AACAACTTCT ATACGGTTAC TGTCTATAAC AAAGGTGCCG AAGTTATTCG TATGATGCAT ACCTTACTTG GTGAAAAGTC ATTTCAAGCC GGTATGAAAC TGTATTTCGA ACGTCATGAT GGTCAGGCTG TGACCTGTGA TGACTTTGCC GCTGCTATGA CAGACGCCAG TGGCGTAGAC CTCTCACTAT TTAAACGTTG GTATAGTCAA TCCGGAACTC CGGTGGTCAC AGTGACGGAG AAGTATGATG CTAAAAAGGC GTGCTATTCT CTTGTTATCG AGCAGGTTAC ACATTCTACG GCGGATCAAA CTGACAAACT AGCACTTCAT ATTCCGTTTG ATTTAGAGCT TTTATCACCG GATGGAACCT CAATGTTGAG TCAGGTTTTG AATGTTAAGG AGTCTCGTCA GGAGTTTATC TTTAATGATA TTACCGAGCA GCCGATACCT TCGCTACTGC AAAACTTCTC GGCGCCGGTT AAGCTTGATT TCTCCTACTC GGTCGAACAG TTAGTGCATC TGATGCGCTA TGCCAGCAGT GAAGTTGCCC GTTGGGAAGC CTCTGTAGCG CTTATCAGCC AATCTATTTG GGATAATGTC GCTAACTTAG ACCAGCAGCA ATCGATGCAC ATCGATCCAC GAGTGACCGA TGCCTACCGT GGTATACTCC TCAGTGAAGA GCTTGACCAT GCTCTGGTTG CCGAAATCTT TACTCTGCCT TCGGTCTCAG CCTTAATTGA ACAAGCAGAA ACTGTCGATC TCGATGCCCT GGCGACTGCC AGGTCTTTTG TGGTTGAAGA GCTGGCAATG GCCTGTGAAG ATGAACTACT TAGCCGTTAT CGTGAGCAGG CGAGTATCGA TAATGCCGGT TCACGTGCGC TTAAGAATAT TTGCTTGTTG TTACTTCAAA AAGTTTCAGA TGACCATCAG CGATTTGCCA AAGTGCAGTA TGAACAGGCT GAAAATATGA CTGACAGTCT TGGGGCATTA CTGGCGCTCA ACGGGGAAGA CTCCTCGCTA CGCACCACCT TGATGTCTGA TTATGAAACC AAGTGGAGTG AGACACCATT GGTGATGGAT AAGTGGCTAT CTCTGCAGGC TACGTGTGCA TCGGATACCT GTTTACAGCA GCTCGAAAGG TTAACTAAGC ATCAATCTTT TAGTTTTTCT AACCCTAACA GAGTGCGTTC GTTAATTGGT GCATTTGCGT CTGCAAACAC GGTACAGTTC CATAAACTCG ATGGCAGCGG TTATGAGTTT GTCACCGACA CCATTATCAA GCTCAATAAG TTAAACCCGC AAGTTGCAGC TCGGATAATT ACGCCTCTTA TTCAGTTTAA AAAGTTTGAC CAAGCCAGAC AGTCACTGAT GAAAGCGTCG CTTAAACGAA TATTAGGGCT CGAAGACTTG TCAAAAGATC TGTATGAGAA AGTGTCAAAA GCGCTCGATT CTAAGTAA
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Protein sequence | MTTMNAKYLK DYLAPAFTIT HIDLDFYLDG AETFVTAKSQ VVRKDDQATT LVLHGEGIEI ISLKVAGVDT CYSQEEAKLS IETQLEEFEL EIVTKLDPES NSSLEGLYMS DGAYCTQCEA EGFRRITYFL DRPDVLAVYS VRVEADAKAF PYLLSNGNLL EQGETSSGRH FVKWHDPFPK PAYLFALVAG DFDLLEDQFV TSSQRQIKLQ VFVDKGNLHK AHHAMASLKK SMAWDESRFD LEYDLDIYMI VAVDFFNMGA MENKGLNVFN TKYVLADTNS ATDEDYHGIE SVVGHEYFHN WTGNRVTCRD WFQLSLKEGL TVFRDQEFSS DLGSRAVNRI HAIKVIKNQQ FAEDSGPMAH PIRPESVIEM NNFYTVTVYN KGAEVIRMMH TLLGEKSFQA GMKLYFERHD GQAVTCDDFA AAMTDASGVD LSLFKRWYSQ SGTPVVTVTE KYDAKKACYS LVIEQVTHST ADQTDKLALH IPFDLELLSP DGTSMLSQVL NVKESRQEFI FNDITEQPIP SLLQNFSAPV KLDFSYSVEQ LVHLMRYASS EVARWEASVA LISQSIWDNV ANLDQQQSMH IDPRVTDAYR GILLSEELDH ALVAEIFTLP SVSALIEQAE TVDLDALATA RSFVVEELAM ACEDELLSRY REQASIDNAG SRALKNICLL LLQKVSDDHQ RFAKVQYEQA ENMTDSLGAL LALNGEDSSL RTTLMSDYET KWSETPLVMD KWLSLQATCA SDTCLQQLER LTKHQSFSFS NPNRVRSLIG AFASANTVQF HKLDGSGYEF VTDTIIKLNK LNPQVAARII TPLIQFKKFD QARQSLMKAS LKRILGLEDL SKDLYEKVSK ALDSK
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