Gene Ssed_2482 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2482 
SymbolpepN 
ID5611161 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3018283 
End bp3020850 
Gene Length2568 bp 
Protein Length855 aa 
Translation table11 
GC content46% 
IMG OID640933403 
Productaminopeptidase N 
Protein accessionYP_001474219 
Protein GI157375619 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0308] Aminopeptidase N 
TIGRFAM ID[TIGR02414] aminopeptidase N, Escherichia coli type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0279976 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00729308 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAACAA TGAATGCGAA GTACCTGAAG GATTACCTGG CTCCTGCTTT TACCATCACC 
CATATCGATC TCGACTTCTA TTTGGATGGG GCAGAGACAT TTGTCACGGC GAAAAGTCAG
GTTGTACGAA AAGATGACCA AGCGACGACC TTAGTATTAC ACGGTGAAGG TATTGAGATC
ATTTCACTTA AAGTCGCTGG TGTTGATACC TGCTATAGCC AGGAAGAGGC AAAACTTAGT
ATCGAGACTC AGCTTGAAGA GTTTGAGTTA GAGATAGTAA CAAAACTCGA TCCTGAATCG
AATTCAAGCC TCGAAGGACT CTATATGTCT GACGGGGCCT ACTGTACTCA GTGCGAGGCC
GAAGGCTTCA GACGTATCAC CTATTTCCTC GACAGACCCG ACGTACTTGC TGTGTACAGT
GTGAGAGTTG AAGCAGATGC CAAGGCATTT CCCTACCTTT TGAGCAACGG TAATTTACTG
GAGCAGGGCG AGACTTCATC GGGACGTCAT TTTGTTAAAT GGCATGATCC GTTTCCAAAG
CCAGCCTATC TGTTTGCCCT GGTCGCAGGA GATTTTGATC TGTTGGAAGA TCAGTTTGTT
ACATCAAGCC AACGGCAGAT CAAATTACAG GTCTTTGTCG ATAAAGGTAA CCTTCATAAG
GCTCACCATG CAATGGCATC GTTAAAGAAG TCGATGGCTT GGGATGAGTC CAGGTTCGAT
CTTGAGTATG ATCTGGATAT ATACATGATT GTGGCGGTCG ATTTCTTCAA TATGGGCGCT
ATGGAGAACA AAGGGCTCAA TGTATTCAAT ACCAAATATG TGTTGGCCGA TACGAACTCG
GCGACAGATG AGGATTATCA TGGTATCGAG TCGGTGGTGG GGCATGAGTA TTTCCACAAC
TGGACAGGAA ACAGGGTGAC CTGCAGAGAT TGGTTTCAAC TGAGTCTTAA AGAAGGGTTA
ACCGTATTTA GAGATCAAGA GTTCAGCTCA GATCTCGGCT CTCGTGCGGT TAATCGTATT
CATGCCATTA AGGTGATAAA AAATCAGCAG TTCGCCGAAG ATTCAGGACC CATGGCGCAT
CCTATACGCC CTGAGTCTGT GATCGAGATG AACAACTTCT ATACGGTTAC TGTCTATAAC
AAAGGTGCCG AAGTTATTCG TATGATGCAT ACCTTACTTG GTGAAAAGTC ATTTCAAGCC
GGTATGAAAC TGTATTTCGA ACGTCATGAT GGTCAGGCTG TGACCTGTGA TGACTTTGCC
GCTGCTATGA CAGACGCCAG TGGCGTAGAC CTCTCACTAT TTAAACGTTG GTATAGTCAA
TCCGGAACTC CGGTGGTCAC AGTGACGGAG AAGTATGATG CTAAAAAGGC GTGCTATTCT
CTTGTTATCG AGCAGGTTAC ACATTCTACG GCGGATCAAA CTGACAAACT AGCACTTCAT
ATTCCGTTTG ATTTAGAGCT TTTATCACCG GATGGAACCT CAATGTTGAG TCAGGTTTTG
AATGTTAAGG AGTCTCGTCA GGAGTTTATC TTTAATGATA TTACCGAGCA GCCGATACCT
TCGCTACTGC AAAACTTCTC GGCGCCGGTT AAGCTTGATT TCTCCTACTC GGTCGAACAG
TTAGTGCATC TGATGCGCTA TGCCAGCAGT GAAGTTGCCC GTTGGGAAGC CTCTGTAGCG
CTTATCAGCC AATCTATTTG GGATAATGTC GCTAACTTAG ACCAGCAGCA ATCGATGCAC
ATCGATCCAC GAGTGACCGA TGCCTACCGT GGTATACTCC TCAGTGAAGA GCTTGACCAT
GCTCTGGTTG CCGAAATCTT TACTCTGCCT TCGGTCTCAG CCTTAATTGA ACAAGCAGAA
ACTGTCGATC TCGATGCCCT GGCGACTGCC AGGTCTTTTG TGGTTGAAGA GCTGGCAATG
GCCTGTGAAG ATGAACTACT TAGCCGTTAT CGTGAGCAGG CGAGTATCGA TAATGCCGGT
TCACGTGCGC TTAAGAATAT TTGCTTGTTG TTACTTCAAA AAGTTTCAGA TGACCATCAG
CGATTTGCCA AAGTGCAGTA TGAACAGGCT GAAAATATGA CTGACAGTCT TGGGGCATTA
CTGGCGCTCA ACGGGGAAGA CTCCTCGCTA CGCACCACCT TGATGTCTGA TTATGAAACC
AAGTGGAGTG AGACACCATT GGTGATGGAT AAGTGGCTAT CTCTGCAGGC TACGTGTGCA
TCGGATACCT GTTTACAGCA GCTCGAAAGG TTAACTAAGC ATCAATCTTT TAGTTTTTCT
AACCCTAACA GAGTGCGTTC GTTAATTGGT GCATTTGCGT CTGCAAACAC GGTACAGTTC
CATAAACTCG ATGGCAGCGG TTATGAGTTT GTCACCGACA CCATTATCAA GCTCAATAAG
TTAAACCCGC AAGTTGCAGC TCGGATAATT ACGCCTCTTA TTCAGTTTAA AAAGTTTGAC
CAAGCCAGAC AGTCACTGAT GAAAGCGTCG CTTAAACGAA TATTAGGGCT CGAAGACTTG
TCAAAAGATC TGTATGAGAA AGTGTCAAAA GCGCTCGATT CTAAGTAA
 
Protein sequence
MTTMNAKYLK DYLAPAFTIT HIDLDFYLDG AETFVTAKSQ VVRKDDQATT LVLHGEGIEI 
ISLKVAGVDT CYSQEEAKLS IETQLEEFEL EIVTKLDPES NSSLEGLYMS DGAYCTQCEA
EGFRRITYFL DRPDVLAVYS VRVEADAKAF PYLLSNGNLL EQGETSSGRH FVKWHDPFPK
PAYLFALVAG DFDLLEDQFV TSSQRQIKLQ VFVDKGNLHK AHHAMASLKK SMAWDESRFD
LEYDLDIYMI VAVDFFNMGA MENKGLNVFN TKYVLADTNS ATDEDYHGIE SVVGHEYFHN
WTGNRVTCRD WFQLSLKEGL TVFRDQEFSS DLGSRAVNRI HAIKVIKNQQ FAEDSGPMAH
PIRPESVIEM NNFYTVTVYN KGAEVIRMMH TLLGEKSFQA GMKLYFERHD GQAVTCDDFA
AAMTDASGVD LSLFKRWYSQ SGTPVVTVTE KYDAKKACYS LVIEQVTHST ADQTDKLALH
IPFDLELLSP DGTSMLSQVL NVKESRQEFI FNDITEQPIP SLLQNFSAPV KLDFSYSVEQ
LVHLMRYASS EVARWEASVA LISQSIWDNV ANLDQQQSMH IDPRVTDAYR GILLSEELDH
ALVAEIFTLP SVSALIEQAE TVDLDALATA RSFVVEELAM ACEDELLSRY REQASIDNAG
SRALKNICLL LLQKVSDDHQ RFAKVQYEQA ENMTDSLGAL LALNGEDSSL RTTLMSDYET
KWSETPLVMD KWLSLQATCA SDTCLQQLER LTKHQSFSFS NPNRVRSLIG AFASANTVQF
HKLDGSGYEF VTDTIIKLNK LNPQVAARII TPLIQFKKFD QARQSLMKAS LKRILGLEDL
SKDLYEKVSK ALDSK