| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2480 |
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| Symbol | |
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| ID | 5610479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3015574 |
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| End bp | 3017634 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933401 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474217 |
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| Protein GI | 157375617 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0308258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0283529 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGG TTATAAACGG CTTTAACAAG TCGACGCTTA CTTTGGGGAT CGTAGCGGCA
CTGAGTATGG GAGTTACTTC CGGTGTCAAC GCTGTATCAT TTGATTGGGG AGAAGTTCAA
GGAACATTCG ATTCAACCTT CTCTGCCGGC GCTAGTTGGC GGGTCGAGGG ACGTGATTGG
GATAACAATA TTGGTAAAGT GAATCATCCC AGATTTGATT GGTCAAACTA CTCTGCGTTC
AATAATACGA AATATACCTC CGCCGAGATT TGGGCTCAAC CTGGGTCATA TTCCAGTAAT
GGTGACTTGA GTAATCTACT CTATTCCCAA GGTGATACAA CGGCTGTTGT GTTCAAGGGT
TTACACGAAC TTTCACTCAA ATACAAAAAC TTCGGTATCT TCGCTCGTGG CATGTACTTC
TACGATCAGA AAGCGAATAA CGGCGACTAT GGTTATAGCG ATCCGTTAAC GGGTAAAGAG
TACGATCCTT GTATGGACTC GGAAGCATCG AAAGTCCAAT GTAAAGATGT ACGCTTGCTT
GATGCTTTCG TTTACGGCAA CTTCGATTTC AATGATGGGG CTAACCCGCT TACCATTCGT
GTCGGTAACC AGGTGGTCTC TTGGGGTGAA AGTACCTTGA TACCTCACGG CATCGGTGTG
ATTAATCCTG TCGATCTCAA TATCCTCAAT GCGCCAGGTG CAGAACTTAA AGAGGCATTC
AGGCCTCAGG GAATGGTGTG GGCATCATTT GGCATGACAG ATGAGCTATC AGTCGAGGCC
TTCTACCAAT ATGACTGGGA GCCTGTTTGG GTACCGACGC CAGGATCATA TTTCTCGTCG
AACGATTTTG CCGGATATGG CGGCTATGGC CAAAATGCTC AGTTAGGTTT TCAGGCCAAC
CCGGACATGA ATCTGGAGTT CCTCGAAGCG GAATATAATA AGTTAGCCCA GATGATTATC
TCAGGTGATT ATGACTCGGC GACGCTTGGT GCATTAGCTT TAGCCTATCC CACCAAGGCT
ACGCTGGTAC AAGATCAAGC CAGTGCCAGC GATTCGGGAC AGTATGGTGT AAAGCTGGGT
TACTACTCAC CGGCTTTGTG GGAGACCGAG TTTGGCCTCT ATTACATGAA TTATCATAGT
CGCAGACCTC TCATTAGCGG AACGACGGCT GATTTTGGTC AACAGGCGAT CGCCAATGAT
CTAGGTACGC TCGGTGCGCT TGCGGCGACT GGCGGAAGCG TCGATCGCGA TGTGCTGCTT
GGTTTAGAAA CCTTCTCTAA GGCGCAGATC GAGTACCCTG AAGATATCCA ACTCTATGGC
TTCAGCTTCA ATACATTGAT AGGCGATACT TCGGTTGCCG GTGAAATTGC TCACCGTCAG
GATGAACCAC TGCAAATTGA TGATGTTGAA CTGCTGTTTG CTGCTATGCC GCAACAGCTG
GCGAATGCGG GTCTTCGCCC CGATTTCGAT GGGATATCTC AATACACCTC TTATGTCGAT
GACGTGGGAC CTGGCGAGTA TGCAGAGGGC TTTATACGCC TGGATACCAC TCAAGCCCAA
GCCACCTTTA CTCACCTGTT TGGGCCTACA TTAGGCACGA GTAATCTGGT TATGTTAGCC
GAGATTGGTG GCGTGTGGAT CCATGATATG CCAGGTTTCG ATGAGTTAAG ACTCAATGGA
CCGGGGACTG CGCGTTCGGG TGGAAATCCG GATATGCCAG GTATCATCGA AGGTGTGCAT
AATGGTCCGG AGACCAACCC ATTCCCCACT GACTTCGCCT GGGGTTACCG TTTAGTCGCT
AAGGCTGATT ACAACAACTT GTTTTCTGGT GTCAATATGT CTCCTCGTGT GATCTTCTCA
CATGATGTAG AGGGTATTAC GCCCGATCCT ATGTTCCTGT TCACCGAAGG AAAGAAATCA
GTTTCTGTCG GCGTAAACTT CGATTATCAG AATCGTTGGG GCGCAGATTT CTCCTACAAT
AGCTTCTTTG GTGGCGTCGG TACGACTAAC CAGATGTCAG ACCGTGATTA CGTGTCATTT
AACATCAAGT ACTCAATCTA A
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| Protein sequence | MKKVINGFNK STLTLGIVAA LSMGVTSGVN AVSFDWGEVQ GTFDSTFSAG ASWRVEGRDW
DNNIGKVNHP RFDWSNYSAF NNTKYTSAEI WAQPGSYSSN GDLSNLLYSQ GDTTAVVFKG
LHELSLKYKN FGIFARGMYF YDQKANNGDY GYSDPLTGKE YDPCMDSEAS KVQCKDVRLL
DAFVYGNFDF NDGANPLTIR VGNQVVSWGE STLIPHGIGV INPVDLNILN APGAELKEAF
RPQGMVWASF GMTDELSVEA FYQYDWEPVW VPTPGSYFSS NDFAGYGGYG QNAQLGFQAN
PDMNLEFLEA EYNKLAQMII SGDYDSATLG ALALAYPTKA TLVQDQASAS DSGQYGVKLG
YYSPALWETE FGLYYMNYHS RRPLISGTTA DFGQQAIAND LGTLGALAAT GGSVDRDVLL
GLETFSKAQI EYPEDIQLYG FSFNTLIGDT SVAGEIAHRQ DEPLQIDDVE LLFAAMPQQL
ANAGLRPDFD GISQYTSYVD DVGPGEYAEG FIRLDTTQAQ ATFTHLFGPT LGTSNLVMLA
EIGGVWIHDM PGFDELRLNG PGTARSGGNP DMPGIIEGVH NGPETNPFPT DFAWGYRLVA
KADYNNLFSG VNMSPRVIFS HDVEGITPDP MFLFTEGKKS VSVGVNFDYQ NRWGADFSYN
SFFGGVGTTN QMSDRDYVSF NIKYSI
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