| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2478 |
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| Symbol | |
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| ID | 5610477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3013107 |
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| End bp | 3014132 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933399 |
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| Product | BNR repeat-containing protein |
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| Protein accession | YP_001474215 |
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| Protein GI | 157375615 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4447] Uncharacterized protein related to plant photosystem II stability/assembly factor |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0183941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0107385 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGTTTA GCATGCTTCG ATTTGTTTCT GTTTGTTTAA TTGCTGCCCT TTTTCTGTCA
CCTGTATCTC AGGCGAGTGA TGCAAACGGT TCAAGTAGTC AAATTCAGCC ATTAGCCATC
GAGTCAATCA TCCTCGATAT TGCGACTAAG GGGGCCACTA CGGTTGCCGT CGGTGAACGC
GGACACGTTT TCATTCTTAA TGGTGAAAAA GAGGGGCTGT GGACGCAAGT TTCAACGCCG
ACGCAGGCCC ACCTCACAAA AGTATTTTTT ATCACTCCTG AACTTGGTTG GGCGGTTGGC
CATGATGCTA CCATTATTCA TACCATCGAT GCCGGCTTGA CCTGGCAGTT ACAGATGGGG
TCACCAGAGA TCGAAAAACC TTTGATGGAT ATTCTCTTCT TTGATGAACA AAATGGAGTG
GCTATAGGCG CTTATGGCTT GTTCTATAGA ACGTCTGATG GTGGTAAAAC ATGGTTAAGC
GAATACCATG AAGAGTTGCT GTTTGAGGAA GATGTCAGCT ACCTGGCTGA ATTAAAGGCA
GAAGATGAGG CGCTCTATCT AAGTGAACGC AGTGCTTTGC TTCCACATTT CAATCGCATT
AATTCGCTGT CTAACGGTCA ACTCATTATG GTCGGAGAGC TTGGCTTAGT TGCCGTGTCA
GACAATCGAG GCAAGCAGTG GACCAAAGTT GACTTCATCT ATGAAGGCTC CCTGTTCAAT
ACCATTCAAC TCAATGACAC TATTTTCGTT ATGGGACTGC GAGGTCACAT TTTCCAAGCC
TCTCTTGATA TGGGCAGCTG GAAAGAGGTG ACATTACCTG TCAAGTCTAC GATTAACGGC
GCTTTGCCGA ACAATGATGG CGGGTTGATT TTAGTCGGTA ATGCCGGTGT GATAATTGAT
GTACCCGCTC TGGGAGAGAG TAAGATTATT CATCAGCGAC AGGGAGAGAA TCTCGTTGCT
ATTAATCAAG ATCCACAGGG ACATATTTGG GTGGCTGGTA CAAAAGGCCT CTTCGAATTA
AAATAA
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| Protein sequence | MLFSMLRFVS VCLIAALFLS PVSQASDANG SSSQIQPLAI ESIILDIATK GATTVAVGER
GHVFILNGEK EGLWTQVSTP TQAHLTKVFF ITPELGWAVG HDATIIHTID AGLTWQLQMG
SPEIEKPLMD ILFFDEQNGV AIGAYGLFYR TSDGGKTWLS EYHEELLFEE DVSYLAELKA
EDEALYLSER SALLPHFNRI NSLSNGQLIM VGELGLVAVS DNRGKQWTKV DFIYEGSLFN
TIQLNDTIFV MGLRGHIFQA SLDMGSWKEV TLPVKSTING ALPNNDGGLI LVGNAGVIID
VPALGESKII HQRQGENLVA INQDPQGHIW VAGTKGLFEL K
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