| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2476 |
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| Symbol | |
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| ID | 5611383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3005662 |
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| End bp | 3010506 |
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| Gene Length | 4845 bp |
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| Protein Length | 1614 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933397 |
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| Product | NAD-glutamate dehydrogenase |
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| Protein accession | YP_001474213 |
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| Protein GI | 157375613 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.450478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00166764 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCTTGA AAGATGCAAT GCCTTCAGTA CTACTCGAAA ATGTAGTTAG CCTAATTCAC
TCTAAAGTTC CTCAATCACA ATCAAAACAA GTAGAGCAGC TTGCGGCTTG CCTTTATGCT
CATATGTCCA AAGACGACCT CAATGCCCGT AATGACAGTG ATCTTTATGG TGCGGTACTC
AGTTTATGGA ATTCGGCAAA TGTCACCCCT AAGGGGGAGT CTCATATTCG GGTTTTTAAC
CCTAGTCAGT CTAAACATGG TTGGCAGTCG ACTCACTCGA TCATCGAAGT TATTCAACCC
GATATGCCAT TCCTGGTTGA TTCTGTCGGT ATGGCACTCA ACCGAATAGG TATCACTGCC
CACGCGATTC TGCATACTCC TCTCTCAATA AAAAGAACTA AAGGGATGAT TTCGCAGGTT
CACTACGGGG ATGAAGGCGG CGATAAACTT GAAAAGGTCG CAGTGTTCCT GATTGAGATT
GATAGACAAA GCAGTGACAA GGATATTAAG CAATTAGAGA AAGAAATTGA ATCTGTGTTG
GGTGATGTAG CGGCGTCGGT TGGCGACTGG GACATGATGT CTGACAAATT GACAGAGACA
ATTAAAGAGC TCGATACTCG CCCATACCCG GGCCATAAGA GTGAGCGTGA AGAAGCGATT
AATTTTCTTA AGTATCTTAA CGATCACCAT TTTACACTAC TAGGTTATCG CAGGTACGAT
CTACGCAAGG TTGAAGGTGA TTTAGAACTC ATTCCCGATA CTTCAACGAG CCTGGGATTA
ATGAATATTC CCGGTAAGCC AAAGCCTGAA ACCGGATTAC TCATCTCCCG GTTATCGGAA
AGCGCCCGTA AAGAAGCCTT GGATAATAGC TTGTTGGTCT TGACCAAAAG TAGCGAAAAA
AGTCGTGTTC ACCGCCCAGC CTATGTCGAT TACGTTGGCG TTAAACGTTT CGATGAAAAA
GGCAATGTGA TTGGCGAAGA TAGATTCTTA GGCCTCTACG TTTCTAATCT CTATAATCGT
AGCCCTCGTG AAATTCCACT GTTAGCCGAA AAAGTACAGC GAGTGCTGGA CCGCTCCGGT
TTGACACCGA GCTCACACGA CTATAAAGCC TTGATGCACA TCCTGGAGAC ACTACCCCGC
GATGAACTTA TTCAGGGGAA TGTCGAAGAG TTAGCCCATG TCGCCCATGG TGTTCTGGAG
ATGCAAGACA GAGATAAATT GAAACTATTT GTACGTAAAG ATGGTTTCGG TCGCTTCCTC
TCTTGTTTGG TATATGTCTC TAAAGATAGA TATAACACTA AACTACGTGA AGATACTCAG
CGAATTCTTG GCCAGCACTT CAACAGTGAT TCAGAAGTTG AATTTACAAC TTATTTCTCA
GAATCAACGC TCGCGCGAAC TCATTACATA GTGAAAGTCG ATAATAATAA TATGGATGTG
GATGTGGCTG CTATCGAAAA CAATTTAATT GAAGCTGCTC GCTCTTGGGA AGATAAACTC
AATGATGCAT TGAGTAGTGC TCAGGGTGAA GAGTTAGGTA AGAGTCTTAG CAAGCGTTAT
ATCAATGCTT TTCCTCGTAG TTATAAAGAG GATGTATTGC CAAGCTCTGC TGTTGTCGAT
ATTCAGCATC TTGAGTCTCT GAATGATGAG CTGCAACTGG GGATGCTTTT CTATCAGCCA
CAAGAGACTG CACTTAATAA CAGTAAAGTT CGTCTCAAGT TGTTCCATAA AGATGAGCCT
ATTCATCTGT CTGATGTTTT ACCTATGCTG GAAAACTTCG GTCTAAGAGT GATCAACGAA
CGTCCCTATG AACTTAAGAC GGCGGATGGC GCAACCTATT GGATCCTCGA TTTCTTGATG
ACAGTGCAGG GCACGTCAAC ACAGAGCATC GCTGATAGTC AGCTTCGTTT CCAAACTGCG
CTATCTGAAG TGTGGAGAAA GAAACTTGAA GATGATGGAT TTAACCGATT AGTGTTAGCG
ACAGGTCTTG GTGGAAGAGA AGTCTCGATT CTACGTGCTT ATGCGAAATA TATGCGCCAG
ATCGATGCAA CCTTCAGCCA AGCTTACATC GAGGAGACAT TCACTCGCTA TCCTCAGATC
GCAGATTTTC TGGTTAAGAT GTTTATGCGT AAGTTTAACC CGAAACTTAA GACTCGCACG
CTGAGTAAGT TTGTTGAACA GATCGATCTG CGTTTGGAAG ATGTGTCCAG CCTGGATGAT
GACAGAATTA TTCGTCGTTA CTTAGATCTT ATCAATGCCA CGTTGAGAAC GAACTTCTAT
CAAGTTAGCG AAACTGCTGA AGTGAAAGCT TATCTTTCAT TCAAATTTGC ACCGGAAGAG
ATCCCTGAGA TGCCTCGTCC TCTGCCTAAA TTTGAAATCT TTGTCTATTC ACCAAGAGTC
GAAGGTGTGC ACCTTCGTGG TGGCAAAGTG GCGCGTGGTG GTCTGCGTTG GTCTGACCGT
CGTGAAGATT TCCGTACTGA AGTATTGGGT CTTGTTAAAG CGCAGCAAGT TAAAAATACC
GTAATCGTAC CGGTTGGTGC TAAAGGTGGT TTTGTTTGTA AGCAACTGCC GACAGAGGGA
GGACGCGAAG CGTTCTTTAC TGAAGGTCAA GAGTGCTACC GCCTGTTTAT TCGCGGTTTA
TTGGATATCT CTGACAATAT TATCAATGGG GAAGTCGTAC CGCCTGCGAA CGTCGTTCGT
CATGACGAAG ACGACCCTTA CTTAGTCGTC GCAGCCGATA AAGGCACCGC AACCTTCTCT
GATATCGCGA ATGCTATCTC CGAGGAGTAT AACTTCTGGT TAGGTGATGC TTTTGCTTCG
GGTGGTAGCA ATGGTTATGA CCACAAGAAG ATGGGCATCA CGGCTCGTGG TGCTTGGGAG
TCTGTTAAAC GTCATTTCCG TGAGATAGGT ATCGATTGTC AGACAACCGA TTTTTCCTGT
CTGGCAGTCG GTGATATGGC CGGAGATGTA TTTGGCAACG GTATGTTGCT ATCTGAACAT
ACTCGCTTGG TTACTGCCTT TAACCATTTG CATATCTTTA TCGACCCTAA CCCTGATGCA
GCATCAAGTT ATAAAGAGCG TGCGCGATTA TTTGAACTCC CTCGTTCAAG TTGGGAAGAC
TATAACAAGG AGCTTATCTC TAAGGGGGGG GGCATATTCC TTCGTTCAGC GAAGAAGATC
TCTTTGACTC CAGAAATGAA GAAGATGCTG GAGACCAAGA AAGCATCGAT GACACCAACT
GAGTTGTTAA AAGAGCTGCT TAAGATGAAG GTCGACCTTA TCTGGAATGG TGGTATCGGC
ACTTATGTTA AGGCATCGAA CGAAACTCAT GCCGAAGTTG GCGACCGCGC TAATGATGCT
CTTCGCGTCA ATGGTGATGA AGTTCAGGCC AGAATTATTG GTGAAGGTGG TAATTTAGGC
TGTACTCAGC TCGGTCGTAT TGAATATGCC AGCAATGGCG GACGTATGAA CACGGATTTC
GTGGACAACG TCGGTGGTGT TGACTGCTCT GATAATGAGG TCAACATCAA GATCTTACTG
AACGCACTGG TTGCCGACGG TGAGATGACG TTGAAACAGC GTAATCGCCT CTTAATTGAG
ATGACTGATG AAGTGGGACG TATTGTCTTA CAAGACTGTA AAGATCAAAC CAGAACCATT
TCGGTTACTC AGGTTCGAGG TGCTGAACAG CTTAAAGAGC AGATCCGCTT TATTCATTAC
CTTGAAAAAG ACGGTAAGCT GGACAGAGGG ATGGAATTTA TTCCGACAGA TGATGAACTT
GCGGAGCGAC TCGCTAATGG TAAGGCGCTA ACTCGTCCAG AGCTGTCTGT ACTGGTTGCC
TATGCGAAGA TGGTGTTAAA AGAGCAATTG CTAACGCCTG AAATTACTGA TGACCCTTTC
CTGAGTCAGC TGCTCATCGC TTATTTCCCT CAACAGTTAA AAGAGAAGTA TAGCGACCGT
ATGGTAGCTC ACCCACTGCG TGCAGAAATT ATTGCCACCT CACTCGCCAA TGAGCTTGTG
AATGATTTAG GCCTTAATTT TGTTCAACGT ATGCAAGATG AGACCGGTGC CTCAGTAGCT
GAAGCTGCCA TTTGTTATAC TATGGCACGT GAAGTGTTTG GTTTATATGA TTTAACCAAA
GAGATCACTG CATTAAATGG AGTTATTCCT GCAGTTGTTC AAGGTGAAAT GCTACATCAA
ATTCGCCGAA ATATTCGTCG TGCTTGTCGT TGGTTCCTAC GCCATCGCAA TCGCAGCCAA
AGTATTGAGC AAACTGTAGG GTTTTATGCT CCGGTATTCG CTGACTTAAA AGCGAATGTA
CACAATTATA TGGTCGAAGA AGAGGTCAAC GGCATACGTT CAGAAATTGC TGCTTTAGTT
AAAGAGGGCG TTACTGAAGA TGTTGCTACC CATGTTGTTA ATATGAGTAC CCTGTTCTCT
GCACTGGATA TATCACAAAT CGCTGAACTT GAAGATAAGC CTGTTGCCTT AGTTGCTCAG
ACGTACTTCA AGTTAGGTGC GCGTGTTGAG TTACACTGGT TCTTAGATCA GATTAGTGCT
CAGCCGGTAG CGAACCATTG GCAAGCGCTC GCTAGAGCGG CCTTTAGAGA AGAGTTAGAC
TGGCAGCAAC GTTCACTGAG TTCGGTCGTA CTTCGTACCT GTACAGATAC GTGTGATGCA
GAGACAATAA TCACGCAGTG GATCGACTCC AATGAGGGCT TGTTGGAGAG ATGGTTCCAC
ATGCTTGCAG ACTTTAAGAC TTCGCAGATC CATGAGTTTG CGAAGTTCTC GGTCGCATTG
CGTGAACTAA ACCTTTTGAT TCTTCATTGT GAAGGTCAAA AGTAA
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| Protein sequence | MALKDAMPSV LLENVVSLIH SKVPQSQSKQ VEQLAACLYA HMSKDDLNAR NDSDLYGAVL
SLWNSANVTP KGESHIRVFN PSQSKHGWQS THSIIEVIQP DMPFLVDSVG MALNRIGITA
HAILHTPLSI KRTKGMISQV HYGDEGGDKL EKVAVFLIEI DRQSSDKDIK QLEKEIESVL
GDVAASVGDW DMMSDKLTET IKELDTRPYP GHKSEREEAI NFLKYLNDHH FTLLGYRRYD
LRKVEGDLEL IPDTSTSLGL MNIPGKPKPE TGLLISRLSE SARKEALDNS LLVLTKSSEK
SRVHRPAYVD YVGVKRFDEK GNVIGEDRFL GLYVSNLYNR SPREIPLLAE KVQRVLDRSG
LTPSSHDYKA LMHILETLPR DELIQGNVEE LAHVAHGVLE MQDRDKLKLF VRKDGFGRFL
SCLVYVSKDR YNTKLREDTQ RILGQHFNSD SEVEFTTYFS ESTLARTHYI VKVDNNNMDV
DVAAIENNLI EAARSWEDKL NDALSSAQGE ELGKSLSKRY INAFPRSYKE DVLPSSAVVD
IQHLESLNDE LQLGMLFYQP QETALNNSKV RLKLFHKDEP IHLSDVLPML ENFGLRVINE
RPYELKTADG ATYWILDFLM TVQGTSTQSI ADSQLRFQTA LSEVWRKKLE DDGFNRLVLA
TGLGGREVSI LRAYAKYMRQ IDATFSQAYI EETFTRYPQI ADFLVKMFMR KFNPKLKTRT
LSKFVEQIDL RLEDVSSLDD DRIIRRYLDL INATLRTNFY QVSETAEVKA YLSFKFAPEE
IPEMPRPLPK FEIFVYSPRV EGVHLRGGKV ARGGLRWSDR REDFRTEVLG LVKAQQVKNT
VIVPVGAKGG FVCKQLPTEG GREAFFTEGQ ECYRLFIRGL LDISDNIING EVVPPANVVR
HDEDDPYLVV AADKGTATFS DIANAISEEY NFWLGDAFAS GGSNGYDHKK MGITARGAWE
SVKRHFREIG IDCQTTDFSC LAVGDMAGDV FGNGMLLSEH TRLVTAFNHL HIFIDPNPDA
ASSYKERARL FELPRSSWED YNKELISKGG GIFLRSAKKI SLTPEMKKML ETKKASMTPT
ELLKELLKMK VDLIWNGGIG TYVKASNETH AEVGDRANDA LRVNGDEVQA RIIGEGGNLG
CTQLGRIEYA SNGGRMNTDF VDNVGGVDCS DNEVNIKILL NALVADGEMT LKQRNRLLIE
MTDEVGRIVL QDCKDQTRTI SVTQVRGAEQ LKEQIRFIHY LEKDGKLDRG MEFIPTDDEL
AERLANGKAL TRPELSVLVA YAKMVLKEQL LTPEITDDPF LSQLLIAYFP QQLKEKYSDR
MVAHPLRAEI IATSLANELV NDLGLNFVQR MQDETGASVA EAAICYTMAR EVFGLYDLTK
EITALNGVIP AVVQGEMLHQ IRRNIRRACR WFLRHRNRSQ SIEQTVGFYA PVFADLKANV
HNYMVEEEVN GIRSEIAALV KEGVTEDVAT HVVNMSTLFS ALDISQIAEL EDKPVALVAQ
TYFKLGARVE LHWFLDQISA QPVANHWQAL ARAAFREELD WQQRSLSSVV LRTCTDTCDA
ETIITQWIDS NEGLLERWFH MLADFKTSQI HEFAKFSVAL RELNLLILHC EGQK
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