| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2475 |
|---|
| Symbol | |
|---|
| ID | 5611382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3004583 |
|---|
| End bp | 3005602 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640933396 |
|---|
| Product | dihydroorotate dehydrogenase 2 |
|---|
| Protein accession | YP_001474212 |
|---|
| Protein GI | 157375612 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0167] Dihydroorotate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01036] dihydroorotate dehydrogenase, subfamily 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00234751 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00462057 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTACA AAATTGCTCA AAAAGTCATG TTTCAGATGG ATCCTGAGAA GGCGCATCAT
CTTGCTATAG CAAGTCTTAA GGCGACGGCG AATACACCTT TAGATTGTTT TTATGCGCAG
AAGTTTACTC AAGCCCCTGT TGAGTTTATG GGAGTGACTT TTCCTAACCC CGTTGGTTTA
GCAGCGGGGA TGGATAAAGA TGGCGAATGC ATAGATGGCT TTCATGCGAT GGGGTTTGGT
CATATTGAAG TGGGGACAGT AACCCCCCGA CCACAACCAG GCAATGATCT GCCACGTCTG
TTTCGCTTGA AGCCTGCGAA AGCGATTATC AATAGAATGG GATTTAATAA CAAGGGTGTT
GATAATCTGG TTGCGAATCT GAAAGCGGCT AAGTCAGGTG CCTTGGTTGG CGTCAATATT
GGTAAGAACA AAGATACGCC AGTAGAGCAG GGTAAAGATG ATTATCTTAT CTGTATGGAG
AAGGTTTATG AATATTCGGC ATATATCGCC GTCAATATCT CATCTCCCAA TACTCCGGGA
CTCCGTAGTC TACAATATGG TGATTTGCTT GATGATCTAT TGGGATCATT AAAAGCCAAA
CAGAAAGATC TTGCTGAGAA GCATGGTAAG TATGTGCCGA TCGCTCTTAA AATTGCGCCT
GATCTGTCAT CAGAAGAGAT TGAGAAAATC GCTGATTCAC TGATCAGAAA TCAATTTGAC
GGTGCTATAG CAACGAACAC TACTCTCAGT CGCGATGGTG TCAGCGGTTT AATGAACTCC
AATGAAGCGG GTGGATTAAG TGGTAAGCCA TTAAATTCAT TATCTACAGC GGTGATTAAA
CAGTTATCAG ATTGCTTAAA AGGTGAGATA CCGATCATAG GTGTAGGTGG AATTAATACT
GCTTCAGATG CTTTAGATAA ACTGGATGCA GGTGCACAAA TGGTGCAAAT ATACTCAGGA
TTTATCTATC AGGGACCTAA ATTAATCCAA GATATTGTTG AGGCTTATAG GGCTAGATAA
|
|---|
| Protein sequence | MFYKIAQKVM FQMDPEKAHH LAIASLKATA NTPLDCFYAQ KFTQAPVEFM GVTFPNPVGL
AAGMDKDGEC IDGFHAMGFG HIEVGTVTPR PQPGNDLPRL FRLKPAKAII NRMGFNNKGV
DNLVANLKAA KSGALVGVNI GKNKDTPVEQ GKDDYLICME KVYEYSAYIA VNISSPNTPG
LRSLQYGDLL DDLLGSLKAK QKDLAEKHGK YVPIALKIAP DLSSEEIEKI ADSLIRNQFD
GAIATNTTLS RDGVSGLMNS NEAGGLSGKP LNSLSTAVIK QLSDCLKGEI PIIGVGGINT
ASDALDKLDA GAQMVQIYSG FIYQGPKLIQ DIVEAYRAR
|
|---|
| |