| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2466 |
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| Symbol | |
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| ID | 5611420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2991829 |
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| End bp | 2993121 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933381 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474203 |
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| Protein GI | 157375603 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.150601 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0506751 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACTTAT TCCGCGCTCC AAATTGCACC TATTACACAC GTATTTGCTA CCCAAAGTCT
TTGAGAGATA TGGGTTTTCC CTTTGATGTA AAAATTTCCT TGTTAACGAA AACTAGAGCC
ATCGCCAAAA AACGAAATTT ACGGGTTATT TTGGCTGTTA ATCAAGCAAT GGATTCAATT
ACGACAGAAA CTGTTTCAGG TGAATTCAAA TCCTCACTAA ATAAACAAAT TGATGCAGTT
CGACTTAGTT TCAGTGACGT CTCTGCTGAA GGCGTTCCAC TGCGTTTTGC CACAAAGGGT
AAAATCGAGG TAAGGGGACC GAACTTAGCG GTTAAACAAT GCGAACAAGT TCCTCTTAAG
CTTGCTTTAG AGATGTTCAT TAGCTCTAAA AGCAAGGAAG GGGTGCGCAC TTTAACAGTA
CAGCAGCTTT ATCAGCGTAT TAGTCATTTT ATTGATGCCA TTAAACCTGA TTTCACCAAT
GAGGTCACGA GCGCTTGTGC GCTTGGCTAT AGAGATTTGT TACTCGACGA GGGAAGAAGC
CACAAAACCA ATAAGGATTA TCTTGCTGCG TCGTCACAGC TCTTTAAATG GTGTTGCCTA
ATGCAGTTCA CTGACGCTAA TCCATTCGCA TTGATCACAC TTAAGCAGCA CTCCCTGGTT
GAGCCTAATT CAGCGCGAAC GCGCTGGCAG AAAAGAGATT TACAGGCCTT ATTTAGTCAT
GAAGAGTTTC AAAAGGCTGA AAACGACTTC AAGTGGGCCA CATTGCTGAT GATGTTTCAA
GGGCTGCGAC CGTCTGAGGC TTGCCAATTA CGTACCGCAG ACGTTATTAA ACAAGAAGGA
CTTTATTGTA TCAAGATTAA TAATGGGGGC GAGAAGCGGA GAGTGAAAAA TGCCTCATCT
CTTCGTATTC TGCCTATTCA TCATTTTCTG TTAAAGCATG GCTTTATTGA GCTTGTTAAG
GAAGCTAGCC AGGCCCAACG AGTGCAGCTG TTTAACTATA TTCCAAGTAA TCAAAATGAG
GATTGGAGTC GCCAATATTG TCAATATTTC GGGCGAATGC AGAATCGAAT TGGAATGAAG
CCGGGTGCTA GGCCGACACC TTACAGTTTC AGGCACACGT TTGTAGATGA GCTGAAACAG
CATGAGGTTG ACGAAAACAT TGTTGCAGAG CTGGTTGGGC ACAAAAACCA GAACATAACT
TTCGGTAGAT ATGGAAAAAA ATACAAAATT TCTCTATTAA AAAAATACGT AGATATCATT
TCATACGATA TTGATTATAC AGAATTATTT TAA
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| Protein sequence | MHLFRAPNCT YYTRICYPKS LRDMGFPFDV KISLLTKTRA IAKKRNLRVI LAVNQAMDSI
TTETVSGEFK SSLNKQIDAV RLSFSDVSAE GVPLRFATKG KIEVRGPNLA VKQCEQVPLK
LALEMFISSK SKEGVRTLTV QQLYQRISHF IDAIKPDFTN EVTSACALGY RDLLLDEGRS
HKTNKDYLAA SSQLFKWCCL MQFTDANPFA LITLKQHSLV EPNSARTRWQ KRDLQALFSH
EEFQKAENDF KWATLLMMFQ GLRPSEACQL RTADVIKQEG LYCIKINNGG EKRRVKNASS
LRILPIHHFL LKHGFIELVK EASQAQRVQL FNYIPSNQNE DWSRQYCQYF GRMQNRIGMK
PGARPTPYSF RHTFVDELKQ HEVDENIVAE LVGHKNQNIT FGRYGKKYKI SLLKKYVDII
SYDIDYTELF
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