| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2465 |
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| Symbol | |
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| ID | 5610919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2990548 |
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| End bp | 2991693 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933380 |
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| Product | putative pore-forming cytotoxin integrase |
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| Protein accession | YP_001474202 |
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| Protein GI | 157375602 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.472408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.135007 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAACA TGATGGAAAA GTTTAACGAT TACGCAAAGC AGTATTTAGC AGAGAGCAAG
TTTGATAAAG CACATTCAAC CTATGTGAGT GAGTGCTCGA AAGTTAAAAA TTTAGTTAGT
TTTTTTGGCA AAAAACAAAT TAGGTCAATA AGCCAATCAG ATATAAAACG GTGGAAAATT
AAAGTTCATC GACGTTTTAG CAATAAAACC ATAAACGAAC ATTTTACAAT TCTCAGAGCT
ATTTTTTCTT GTGCATTAAG TGATTGTGTT TTGGGTCGTA ACCCGATGAC TGGGGTTGAA
AACCTTAAAA TACATACCGC TGAGCCAAAA CCATTGGGAC GTGAAGAGCT TTTAAAGCTT
CATGCTACAC CTGCCCAATG TGAAAGTGGT AAAGCACTGC TGTTTCTAGG CGTGCTAACA
GGGTTACGAA TTAGTGAACT CATAGCTCTA ACTTGGGATT GTATTGATTT TGAATCGAGA
GAAATCAAAG TTCATACGGC AAAAGTCTTG GGCAAATACA AAGTCCCTAA GACTACTAGT
TCAATCAGAA CTGTTGAGAT GAATCAGCAC GCATTCGCGC TATTAAAGAA ACACTATGAA
GTCACTGGTT CGCTTAGGCC CCGTGTTATT CGGGTGCTTC AGAATGATAA CAAGACAATT
GAAAAACGAC GTGTTCAACA TTTGTTTATC AATTCTCAGA GCAATAAGCC ATTCATCGAC
TCTAAGCAGT ATTCAAAAAC ATTCTTCACT CCTTTTTTAG TCAAGGCTTC AGTACAGCAC
AGAGGTCCAA ATCAATTACG CCACACGTTT GCTAGTCAGT GTTTAACTGC TGGAATTAGT
AAAGAGTGGA TTGCGAGACA ACTTGGTCAT AACTCGACGA ACATGGTCGA TAAGCATTAC
GCTCGCTGGC TTCAAAGTGA CGCACCAGAT AATGCCGCAA AATATAGTGA TGCTATGGGG
TCTGTTTTTG CTGAACCGTC AGTCAAGCAG CCGTTTGATA GCAAGTCGGT ACCGACTATC
GTCGCATCAA CCTGGAGTCA GCTTCAACCA AAAGGTCCAT TTTCCGCTTT AAACATGGGG
CCGCTTCGTG AAGGTCTGCC TGGTGCATTC AAAGTTCAGC GTAGGGGAGG CCTGACTCAT
GTTTGA
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| Protein sequence | MVNMMEKFND YAKQYLAESK FDKAHSTYVS ECSKVKNLVS FFGKKQIRSI SQSDIKRWKI
KVHRRFSNKT INEHFTILRA IFSCALSDCV LGRNPMTGVE NLKIHTAEPK PLGREELLKL
HATPAQCESG KALLFLGVLT GLRISELIAL TWDCIDFESR EIKVHTAKVL GKYKVPKTTS
SIRTVEMNQH AFALLKKHYE VTGSLRPRVI RVLQNDNKTI EKRRVQHLFI NSQSNKPFID
SKQYSKTFFT PFLVKASVQH RGPNQLRHTF ASQCLTAGIS KEWIARQLGH NSTNMVDKHY
ARWLQSDAPD NAAKYSDAMG SVFAEPSVKQ PFDSKSVPTI VASTWSQLQP KGPFSALNMG
PLREGLPGAF KVQRRGGLTH V
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