| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2454 |
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| Symbol | uvrC |
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| ID | 5614215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2978809 |
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| End bp | 2980638 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933368 |
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| Product | excinuclease ABC subunit C |
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| Protein accession | YP_001474191 |
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| Protein GI | 157375591 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
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| TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.263996 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.543932 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCCTCTA CATTTGATTC AAAGTTGTTT CTAAAAACCG TCTCCTCATC GCCGGGTGTT
TACCGAATGT ATGATGAAGA GGGGACCGTT ATCTATGTCG GTAAGGCTAA AGACTTAAAA
AAACGGCTGA GTTCCTATTT TCGCGTCAAT CTGCCGAATG TAAAAACTCA GGCGTTGGTT
TCACATATCG CCAATATTGA TGTCACAGTC ACCCACAGCG AAACCGATGC CCTTATTCTC
GAAAATGATT ATATCAAGCA GTATATGCCG AGATATAACG TTTTGCTTCG GGATGACAAA
TCCTACCCTT ATATATTATT AAGCGATCAC AAGCATCCAA GGTTAGCGTA TCACCGCGGC
CCGAAGAGGG ATAAAGGCAG CTATTTTGGC CCCTACCCAA ATGGCGGCGC GGTAAGGGAG
AGCCTTCATT TGTTGCAGAA GATCTTCCCC ATTCGTCAGT GTGATGACCT CTATTATAAA
TCTCGTTCGC GCCCCTGTTT GCAATATCAA ATAGGTCGGT GTAGTGCTCC CTGTGTGAAT
AAAGTCAGTG ATGAAGAGTA TGCCGTGCAG GTCAAGTTGG CGAGTCTATT CCTGAAAGGA
AAAGATCTGC AGGTGATGAC CGAACTGGTT TCTAAGATGG AGGCCTCTGC GCTGGCTCTG
GAGTATGAAC AAGCGGCGAG TTACAGAGAT CAAATAGCCG CCTTAAGGAG GGTGGCAGAG
CAGCAAGAGG TGTCAAACAC CTCCGGCGAT ATGGATGTTA TTGGCGCTTA CTACGCCTCA
GGAGTCGCTT GTTTTCATCT TTTGTTTATT CGGGAAGGTA AAATATTTGG TAGTAGAAGC
TATTATCCAA GTGTCCCCGC GGAAACTGAA TTAGATGAAG TTCTCAGTGC ATTTATGATC
CAATTTTATC TAAACTCAGA TAGTCAGCGG ACCGTGCCTA AAGAGATACT ATTAAGCCAT
GGGTTTGATG ACCTTCCTGA GTTGGAGCGG GCAATACAGA CGGCGCTCGA GAAGAAGGTA
GAGATTAAAA CTAATGTCCG CAGTGAAAGA GCAAACTTTT TACGACTCGC GGTGACGAAT
GCAACAAATG CGGTGAACAC TCGTTTGTCC CATAAAAATA CGGTTGAGCA ACGTTTCTTG
TTACTTGAAG AAGCTTTGGA AGTGTCGACA CTTATCCAAC GGATGGAATG TTTCGACATC
AGTCATACAA TGGGAGAGAG TACCGTGGCG TCTTGTGTCG TATTTGATCG AGAGGGGCCC
AATAAAGCGG ATTATCGACG TTACAATATC AATGGGATCA CGCCGGGTGA TGACTACGCC
GCTATGAAGC AGGCGATAAC GAGACGATTT GATAAAATCG ATAAAAATGG CAAAATCCCC
GATCTGTTAT TCATCGATGG TGGAACGGGT CAGCTTCGTA TCGCACAGAA AATTGTCGAT
GAAAAATTTG TCGATATAGA CAAAACACCA ATGCTGATTG GTGTTGCGAA AGGTGAAGGA
AGAAAACCTG GATTAGAGAC GTTGATATAT GGTGAAAATG AGCAATCTTT CACTATCCCG
GCCGACTCAG GAGCATTACA CCTTATTCAG CATATTCGCG ATGAATCACA TCGTTTTGCC
ATTACCGGCC ACAGAAATAA GCGTCAGAAA ACAAGAAATA CCTCCACCTT AGAATCTATT
GCCGGAGTCG GACCTAAACG CCGTAAAGCG CTTTTGCAAT ATTTAGGTGG TATACAGGAA
GTTAAGGGCG CAAGTGTGGC TGAATTGGCT AAAGTACCCG GTATTAGTTT AGAAATGGCA
CAAACGATAC ATGATTCATT GCGAGGCTAG
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| Protein sequence | MPSTFDSKLF LKTVSSSPGV YRMYDEEGTV IYVGKAKDLK KRLSSYFRVN LPNVKTQALV
SHIANIDVTV THSETDALIL ENDYIKQYMP RYNVLLRDDK SYPYILLSDH KHPRLAYHRG
PKRDKGSYFG PYPNGGAVRE SLHLLQKIFP IRQCDDLYYK SRSRPCLQYQ IGRCSAPCVN
KVSDEEYAVQ VKLASLFLKG KDLQVMTELV SKMEASALAL EYEQAASYRD QIAALRRVAE
QQEVSNTSGD MDVIGAYYAS GVACFHLLFI REGKIFGSRS YYPSVPAETE LDEVLSAFMI
QFYLNSDSQR TVPKEILLSH GFDDLPELER AIQTALEKKV EIKTNVRSER ANFLRLAVTN
ATNAVNTRLS HKNTVEQRFL LLEEALEVST LIQRMECFDI SHTMGESTVA SCVVFDREGP
NKADYRRYNI NGITPGDDYA AMKQAITRRF DKIDKNGKIP DLLFIDGGTG QLRIAQKIVD
EKFVDIDKTP MLIGVAKGEG RKPGLETLIY GENEQSFTIP ADSGALHLIQ HIRDESHRFA
ITGHRNKRQK TRNTSTLESI AGVGPKRRKA LLQYLGGIQE VKGASVAELA KVPGISLEMA
QTIHDSLRG
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