| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2452 |
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| Symbol | |
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| ID | 5614213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2976455 |
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| End bp | 2977048 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933363 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001474189 |
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| Protein GI | 157375589 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00816638 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.444869 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGTACA CCATTTCTAA GGGCTTTACT CTGATAGAGC TTGTTGTCGT GATCATTATT
TTGGGAATTT TGTCTGTCGT GGCGCTCCCT AAGTTTATGA GTTTGGGGCA AGATGCACAT
GACTCGGCGG CTAAAGGTGC TTTTGGCGCA TTTCGTTCGG GTGTGAGTCT GTACCACAGC
TGTTGGGCCG CTTCGGGAGC CAGTAATCGT GTGGAAGATT TGGCTTGTTA TGGCGATGGG
ACATTGGATT CGAGTAAGAC GGGTTACCCG TTGAGTACGA AAAACGGTGG CGATGGCACT
GTATTAACCG GAGATAATTG CAGGCAAATC TGGACAGGTT TGATGGAAGG GGATGAGTAC
GTGCTTAGAA ACCTGGGGGC TGCCGATGAT TTTGGTCCTG AAACCGACAT AGTCTATTGG
TATGCTGGTG GTCAATTATA TAAAGGTGAT GGTACGCCAA ATGAGTCTAC TTATTGTTTC
TATGATTATA TCTCCGATAA TCGCTCTAAA GTAGAGCATT GGCAGCTTAG GTATGTACCA
AGCACAGGTA AGACCTTGAT CACCAGGGCT ACTCAAAGTT CAAAGGCTCC TTGA
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| Protein sequence | MKYTISKGFT LIELVVVIII LGILSVVALP KFMSLGQDAH DSAAKGAFGA FRSGVSLYHS
CWAASGASNR VEDLACYGDG TLDSSKTGYP LSTKNGGDGT VLTGDNCRQI WTGLMEGDEY
VLRNLGAADD FGPETDIVYW YAGGQLYKGD GTPNESTYCF YDYISDNRSK VEHWQLRYVP
STGKTLITRA TQSSKAP
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