| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2451 |
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| Symbol | |
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| ID | 5614212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2974857 |
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| End bp | 2976254 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933362 |
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| Product | peptidoglycan binding domain-containing protein |
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| Protein accession | YP_001474188 |
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| Protein GI | 157375588 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000544854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.511504 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTAA GAAATCTTGT TTGGTTGATA TGCACCGGCT TTCTATTGGT TCTGTATGTA
ACTCCAGTTG CAGCAATGGA CAGAAGCGAT GCCGGGCTGA ACTCTCTACG CTATCAGCTA
CAGCTAGTAA ACTTAGTCAG ACCAAGTAAG CAGTCTGAAG ATTCCTATCG AATATTACGA
AGCGGTACAG TGCAGGAGAA ACTCGACAGA GTCGGCGGTA TTCAAGCTGA CTTGAAATAT
TTTTGGCAAA ATAAAAATAT TCCTAATGAT GCCAATAGGC TAGATGACAC AGAGGATCTT
TACCAACGTG CCATCTCTTT AGAACCCACT TCGAGTGATT ACCTTCCCGT TAGCAATAGA
CTGCGTTACT TGCTATGGCT AAGCGAGCAT TATCCCTGGA AACCACTTGT TATTGGTGGC
TGGCTTAAAG AGGGCGATTA TCATAAATCG ATACCTGAGA TAAGTTTTCG GCTCAACATG
CTAGGCGATT TAGATAGCTA TGACAGAAAC AACAAGCAAC TGAACCGAAC ACTTGCAACT
AGTTTACTGC GTTTCCAGCG ACGACATGGT TTAAAGCAAG ATGCGATAAT AGGGCCTGAG
ACCTTGAGAT GGTTGAATGC TTCGCCTAAG AATCGAGCGC GTTTATTAGC AAACAACTTC
TTAAAAAAAT CCAGTTACTT AGCCTCATTG GATAGTCGAT TTTTACTGAT TAATATCCCG
GCATTTGAGA TGGTACTCGT TGACCATGAT GAGATACAGC TAAAATCCAG GGTCATTGTC
GGTAAACCCT ATCGTCAAAC TCCCATGTTG AGTAGTCAAA TATCTAATGT TGTTCTCAAC
CCCAGTTGGC GGGTACCCAG ACGCCTGCTT TGGCGAGATC TATTACCTAA GGTGAGAGAG
AATGGTAGCT ATATTACTCA ACGAAATTTT GATGTGTTCG ATGCTAAAGG CGTGATCATT
GAGAAAAGCC CTGATGAGTG GCAAGAGTTA GCCCAAGGCC GCTTTCCGTA TCGATTGGTA
CAGAGACCCG GTGAAGAGAA TACATTAGGG CGGTACAAAT TTTACTTTGC AAATGACTAC
AATGTTTACC TTCATGATAC CGTCGACAAA TCTCTGTTTG AAGAGTCTAA CAGAGCGTTG
TCATCTGGCT GTATTCGGGT CGAAAATGTG GAGAGCCTGG CAAATTGGAT GGCATCGAAT
TTAGTCAGGG ATAAGCAAAC CTGGGTAGAT ATGCAAGTTG AGAGGCAAAA AACACAATGG
TTTTCTCTCG ATGACTCCTT AGCCGTACAT TTAGTATACT GGACCGCATG GATAGATAGT
GAAGGGGACT CGCAATTTAG AAATGATATT TATAACCAAA ATTCAACAGG TAACCTTGCT
TTAATCGAAA ATCGATAG
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| Protein sequence | MALRNLVWLI CTGFLLVLYV TPVAAMDRSD AGLNSLRYQL QLVNLVRPSK QSEDSYRILR
SGTVQEKLDR VGGIQADLKY FWQNKNIPND ANRLDDTEDL YQRAISLEPT SSDYLPVSNR
LRYLLWLSEH YPWKPLVIGG WLKEGDYHKS IPEISFRLNM LGDLDSYDRN NKQLNRTLAT
SLLRFQRRHG LKQDAIIGPE TLRWLNASPK NRARLLANNF LKKSSYLASL DSRFLLINIP
AFEMVLVDHD EIQLKSRVIV GKPYRQTPML SSQISNVVLN PSWRVPRRLL WRDLLPKVRE
NGSYITQRNF DVFDAKGVII EKSPDEWQEL AQGRFPYRLV QRPGEENTLG RYKFYFANDY
NVYLHDTVDK SLFEESNRAL SSGCIRVENV ESLANWMASN LVRDKQTWVD MQVERQKTQW
FSLDDSLAVH LVYWTAWIDS EGDSQFRNDI YNQNSTGNLA LIENR
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