| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2448 |
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| Symbol | |
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| ID | 5609708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2971902 |
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| End bp | 2973422 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640933359 |
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| Product | SpoVR family protein |
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| Protein accession | YP_001474185 |
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| Protein GI | 157375585 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2719] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0619548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.114389 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCTA AAAAAAAGAG AACTCCACTC GATGACGGGC CCGATTGGAA CTTCGAGCTA
CTTCAGTCAT ATTTAACTGA AATCGAAAGA GTGGCTGCAC ATTATAAGCT TGAATCTTAT
CCAAACCAGA TAGAGGTCAT AACAGCCGAG CAGATGATGG ATGCTTATGC CGGCATAGGC
ATGCCAATAG GTTATACCCA CTGGTCCTTC GGGAAAAAGT TTATCGAAAC GGAGCAAAGC
TATAAACGAG GACAGATGGG CCTGGCCTAT GAGATAGTGA TCAACTCAGA TCCCTGCATC
GCCTACCTTA TGGAGGAGAA TACCATCACA ATGCAAGCCC TTGTGATGGC GCACGCAAGT
TTCGGCCACA ATAGTTTCTT CAAGAATAAT TATCTCTTTA AAACCTGGAC CGATGCCAGT
TCGATTATTG ACTATCTGGT TTTTGCGAAA AACTATATTA GTCAATGCGA GGAAACACAC
GGTACAAACC AAGTTGAGCT TATCGTCGAC TCCTGCCATG CGTTAATGAA CTATGGCGTC
GACCGCTATA AGCGTCCGAG CGAAATTTCA TTCAAAGAAG AGCAGCTAAG ACAAAAAGAT
AGAGAGGAAT ACCTGCAGAG CCAAGTCAAT GATCTATGGC GAACCATCCC CTTCACTCCT
CATGATGATA TCGAAAAGGA AACATTCAAC TTTCCTGACG AGCCCCAGGA AAACATTCTC
TATTTTATTG AGAAGAATGC CCCTTTGTTA GAACCCTGGC AGAGAGAGAT AGTTCGGATA
GTAAGAAAAA TGGGCCAGTA TTTTTATCCT CAGAAACAAA CTCAGGTAAT GAATGAGGGC
TGGGCTACCT TTTGGCATTA TACGATTCTC AACCATCTCT ATGACGATGG CGTAGTTACC
GATAGATTTA TGATGGAGTT TCTTCAAAAT CATACCAATG TCATTGTACA GCCTAGCTAC
AATAGTCCCT ACTATAGTGG GATAAACCCG TACGCCTTAG GGTTTAATAT GTTCGTGGAT
ATAAGGAGAA TTTGTGAGTC CCCTACCGAA GAAGACAAAC TTTGGTTTCC TGATATTGCT
GGCAGCGATT GGTTAGAAAC ATTACATTTT GCAATGCAAA ACTTTAAAGA CGAGAGCTTC
ATCAGCCAAT ATCTTTCACC TAACATCATC AGGCAGTTCA AGCTTTTTAG CATTCTTGAC
GATGATAAAA AAAACTACCT GTCAGTCTCT GCCATCCATG ATGAACAAGG GTATAAAGAT
ATCCGTCAGA TGTTGTCGCA ACAATATAAC CTTTCCAATA TCGAGCCTAA CATTCAAGTT
CAAAAAGTGG ATATTACCGG AGACCGTTCA TTAACACTAA GGTATGTACC GACTAACAGA
ATCCCACTAG CCAAAAGTCG CCATGAAGTC GTGAAGCACC TACATAGACT CTGGGGATTT
GATGTAAGAC TCGAAGAGTT TAACGAAGAG GGAGTGCAAA ATATCATTGC CTCTTGCCCG
GATAAACAAG CCGAGGAGTA A
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| Protein sequence | MDAKKKRTPL DDGPDWNFEL LQSYLTEIER VAAHYKLESY PNQIEVITAE QMMDAYAGIG
MPIGYTHWSF GKKFIETEQS YKRGQMGLAY EIVINSDPCI AYLMEENTIT MQALVMAHAS
FGHNSFFKNN YLFKTWTDAS SIIDYLVFAK NYISQCEETH GTNQVELIVD SCHALMNYGV
DRYKRPSEIS FKEEQLRQKD REEYLQSQVN DLWRTIPFTP HDDIEKETFN FPDEPQENIL
YFIEKNAPLL EPWQREIVRI VRKMGQYFYP QKQTQVMNEG WATFWHYTIL NHLYDDGVVT
DRFMMEFLQN HTNVIVQPSY NSPYYSGINP YALGFNMFVD IRRICESPTE EDKLWFPDIA
GSDWLETLHF AMQNFKDESF ISQYLSPNII RQFKLFSILD DDKKNYLSVS AIHDEQGYKD
IRQMLSQQYN LSNIEPNIQV QKVDITGDRS LTLRYVPTNR IPLAKSRHEV VKHLHRLWGF
DVRLEEFNEE GVQNIIASCP DKQAEE
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