| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2440 |
|---|
| Symbol | |
|---|
| ID | 5609909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2961643 |
|---|
| End bp | 2963571 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640933351 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474177 |
|---|
| Protein GI | 157375577 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00616758 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCT TAAAAACAGT CATGTTAGTC AGTACATTAT CCTTAATCGC CTGTGGTAGC
TCAGATGATG GCGAGCCCAT GCCCACGTTT CCTCGTTGTG AACTGCAATC GCAGTTAACC
AGCATAGAAA CGGGGTCTGA TTTAGAGTTT TTAGTTGAGG AGGATTACCA GGTTAATCAG
TCGGCTGCCA TCATCGCAAG AATAAACAAC CAAGATAGCG ACGGTTTACA CTTCAGTTGG
CAACAGTTAA CGGGACCGGC TCTTATTTTA AAATCGATAA AGAGCCAAGT CTTAGCGTTT
CAGGCAACGA AGCCTGGGAG TTACACTTTC TCCGTTACCG TTAGCGGAGA TGAGTTGTTA
TTAGAGAAAA ATATTGAATT AACGATTCAG GAAGGCCCGG TAAGCAGATT AAATGTTCGC
TCGGATCACC AGGTAGTAGA GGGAAATAAC GTCAGCTTCA GAGTCGACAG AGTCGATGGT
CAAATCCCAT CCGATTTAAG CTGGTGTATC GCCGCGGGCC CGGATCTTAA TCTCGATACC
AGTAATATCG AAACCCCACA ATTCATTGCC CCAGAGGTTA ACACTGATAC GATAAGCCAG
CTTAGAGCGA CGGCTACCAT TGGTGGAGTT CAAACATCTT CAGACGTCAT TGCTCTCATT
ACCCATGAAC AAGTCATCAC CTCTGAGTAT TTTGATAAAC CGATAGCCAG AACCCATCCT
TACAAAAGCG ATACTCCCTA TGCCGGTAAT CTGCAAAGCT GTGTTTATTC TAACCAGCTA
ACCGCACCTT GTAGCATAGA GCAGCTGCCA TTGATAGGAC ATACACAAGC GCTACCGGAC
AAGAATAAAA TTCTAGACCG ATTACTGGTT TCTCATCAGT GGATGGGGGA AAATTTTGAG
GCTTTTCTGA ATGAAATGGA TCCGGCGACT GACTTTTCCA AGCTATTACA ATCAGTAACG
GCAGTCGTGA TTAGTTACGA TATTCGTCCT TCTTTCTACT GGGCCTTAAC CGGCGCGATC
TATCTGGATC CAAATGATCT TTGGCTACTT GCCCAGGAAC GTGACGTCAT TAATGAGGCC
GCTGATTACC GAAGTCTATT CGGCAACGAG TTAAATTTTA TTATGCCTTG GCGCTATGTA
AAAGATAACC AATATGTCTC CTACAGTGTA CCTAGAGAAA CCCGCACCCA TCGGACCATG
GCTGAATTGT CCCCTGAGCT TTCGTCACTC CTTTATCATG AACTCGCCCA TGCAAATGAT
TTCTTTCCGC GTTCAGTACA CGATAGCATC GAAGGTGGTA CCTTACTCGA CCACTACAAT
AGAAGATCCC TTGCTGGTGA ATTAGTATCG GATAAGGTTA CAGCTCAATA TCCACTGTAC
AGTGATGAAC TCACCTCTCT GGCGAATGTA AGCTTCCGTG GTCAGGCGGC TACTGCTATC
CAAAAAGCCT ATCTACCTGC CGATATTACA CAATTCTTCT CAACAGACAG GGCAACAGGT
TATTACGCTT ATTCAACCAA ACGTGAAGAT ACGGCGATGC TGTTTGAAGA GGCGATGATG
AGCCATCGAT ATAGGATCTT ACGTGATGTC GGTATAACGG ATAAACCGGA TAGCCCTACC
GCGAGTAACA TTCTTGTTGA TTGGGGCCAG AGAGGCCGAA TAGGAGAGGA TACGATTCAA
GCCAGAGCAG CATTAGTGAT TAATGAAATA TTACCAGAAC TCGATGGTAA CACCTTAGTC
GGGGCGCTTC CTGATCCGAT CCAGATGACT CAAGGGTTGT CCTGGTTAGA TAATTTAACG
ATTTCACCGG TTCTGTCAAT CTCATCTGAC TCTGAGCACC TCTCAAAACA GGCTCCTATC
AGTAATCACA CACAGAGAGT AATACCAGAA CTCAGAGTCA GTGGCGACAG GCATAAAATA
GATAATTAG
|
|---|
| Protein sequence | MNTLKTVMLV STLSLIACGS SDDGEPMPTF PRCELQSQLT SIETGSDLEF LVEEDYQVNQ
SAAIIARINN QDSDGLHFSW QQLTGPALIL KSIKSQVLAF QATKPGSYTF SVTVSGDELL
LEKNIELTIQ EGPVSRLNVR SDHQVVEGNN VSFRVDRVDG QIPSDLSWCI AAGPDLNLDT
SNIETPQFIA PEVNTDTISQ LRATATIGGV QTSSDVIALI THEQVITSEY FDKPIARTHP
YKSDTPYAGN LQSCVYSNQL TAPCSIEQLP LIGHTQALPD KNKILDRLLV SHQWMGENFE
AFLNEMDPAT DFSKLLQSVT AVVISYDIRP SFYWALTGAI YLDPNDLWLL AQERDVINEA
ADYRSLFGNE LNFIMPWRYV KDNQYVSYSV PRETRTHRTM AELSPELSSL LYHELAHAND
FFPRSVHDSI EGGTLLDHYN RRSLAGELVS DKVTAQYPLY SDELTSLANV SFRGQAATAI
QKAYLPADIT QFFSTDRATG YYAYSTKRED TAMLFEEAMM SHRYRILRDV GITDKPDSPT
ASNILVDWGQ RGRIGEDTIQ ARAALVINEI LPELDGNTLV GALPDPIQMT QGLSWLDNLT
ISPVLSISSD SEHLSKQAPI SNHTQRVIPE LRVSGDRHKI DN
|
|---|
| |