| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2432 |
|---|
| Symbol | |
|---|
| ID | 5614150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2955045 |
|---|
| End bp | 2955515 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640933343 |
|---|
| Product | redoxin domain-containing protein |
|---|
| Protein accession | YP_001474169 |
|---|
| Protein GI | 157375569 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1225] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.261051 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000101698 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAT TGATAAAGGG CGACTCAGCC CCACTTTTCG AGCTAAAAAA CCAAGATGAT
CAGCCCATCT CACTATCACA ATGCCTTGAG AGCGGCCCGG TACTCGTTTA TTTTTACCCG
AAAGCATCGA CTCCAGGCTG TACTGTACAG GCCTGTGGGT TGAGAGACAG TAAAACTGCG
CTCAATACGC TGAATGTAAC GGTATTAGGC ATTAGCCCTG ATCCTGTGCC TAAACTGAGC
CGTTTTGCCG AGAAACAGGA ACTGAACTTT TCCCTGTTAA GCGATGAAGA CCATGCTATT
GCAGATGCAT TCGGAGTATG GGGCGAGAAA AAGTTTATGG GAAAAATCTA TGACGGTATC
CATAGATTAA GCTTCTTGAT CGGACAAGAT GGTAAAGTCA CTCATGTATT CAATAAGTTC
AAAACGAAAG AGCACCACGA CGTAGTCCTT AATCATCTCA AAGATGCTTA A
|
|---|
| Protein sequence | MNTLIKGDSA PLFELKNQDD QPISLSQCLE SGPVLVYFYP KASTPGCTVQ ACGLRDSKTA
LNTLNVTVLG ISPDPVPKLS RFAEKQELNF SLLSDEDHAI ADAFGVWGEK KFMGKIYDGI
HRLSFLIGQD GKVTHVFNKF KTKEHHDVVL NHLKDA
|
|---|
| |