| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2430 |
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| Symbol | |
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| ID | 5613775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2953300 |
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| End bp | 2954184 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933341 |
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| Product | dihydrodipicolinate synthase |
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| Protein accession | YP_001474167 |
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| Protein GI | 157375567 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
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| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000104748 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000338239 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAAACG GAAGCATCGT AGCCTTAATC ACACCAATGA ATAGTGATGG CTCAGTAGAT
TACAAAAGTC TTGAAAATTT AGTTGAGTAC CATATTGCTG AAGGTACAGA TGCCATCGTT
GCCGTAGGCA CCACAGGTGA GTCTGCTACT TTACCTATTC CTGAGCATAT CGAAGTCGTA
TCTCAGACTG TAAAATTTGC CGCGGGCAGA TTACCTGTCA TTGGCGGAAA TGGCGGAAAT
GCAACGGCCG AAGCCATAGA GCTAACCAAA GCCCAGTCTA AATTGGGGGT CGCCGCCATG
TTAGGTGTGA CTCCTTATTA CAACAAACCT AGCCCTAAAG GGATCATCGC GCATTATAAA
GCCGTTGCCG CGAGTACCGA TATTCCTCAG ATACTCTATA ACGTACCGGG TCGTACCGCT
GTCGATATGT TACCCGAGAC AGTGGCTGAA TTGGCTGAAG TGCCAAATAT TATCGGTGTG
AAAGAAGCTA CCGGTGATCT TAGTCGCGTT AAACGTCTAC GTGAGCTATG TGGAGATGAT
TTTCTTCTCT ATAGTGGCGA TGATGCAACG GCCAGAGAGT TTCTGACTCT GGGCGGCGAT
GGTGTCATTT CCGTTGCTAA TAACATAGTA CCGAAACAGT TTAAAATGAT GTGTGACGCT
GCATTAGCGG GTAATGTTCA GGCTGCGATG GCGGCCGAAG ATTCAATCAA GGGGCTATTT
AGTGCTCTGT TTTGCGAAGC GAATCCAATA CCTGTGAAGT GGGCAGTTCA TCGAATGGGA
CTTATCAGCC AGGGCGAAAT CCGTTTACCT TTAACGGAAC TTTCTACTGA GTTTCATGGT
CTGTTGTTAG ATGCAATGAA AAATGCTCGA ATTGAGGTTA AATAA
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| Protein sequence | MINGSIVALI TPMNSDGSVD YKSLENLVEY HIAEGTDAIV AVGTTGESAT LPIPEHIEVV
SQTVKFAAGR LPVIGGNGGN ATAEAIELTK AQSKLGVAAM LGVTPYYNKP SPKGIIAHYK
AVAASTDIPQ ILYNVPGRTA VDMLPETVAE LAEVPNIIGV KEATGDLSRV KRLRELCGDD
FLLYSGDDAT AREFLTLGGD GVISVANNIV PKQFKMMCDA ALAGNVQAAM AAEDSIKGLF
SALFCEANPI PVKWAVHRMG LISQGEIRLP LTELSTEFHG LLLDAMKNAR IEVK
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