| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2428 |
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| Symbol | |
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| ID | 5613935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2950824 |
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| End bp | 2951909 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933339 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001474165 |
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| Protein GI | 157375565 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00201655 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000151053 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAAAAAAA TAATAATAAT GATCATTTTG GTCTCGGTGG CTTGGTTTGC TTACCAGGAG
TTTTCTCCCA ATTCCCCCTC TCAAATAAAA AAAGCCAGGC CTATTGCTAA TGTCGTCGTC
GCCAAAGCTG CTATGGAGCA GGTTAGGGAT GAGGTCGAGG CGCTAGGTAC CAGTAAAGCC
TACGAGTCAA TAACGGTAAC CCCTAAAGTT ACAGAGGTAG TGACGCAAAT TAATTTCAAC
GATGGTGATA GTGTTGAGAA AGGACGCTTA CTTGTCCGGT TACAGGATCG AGAGCAAGTT
GCCAGAGTCA CAGTCGCAAG GGTACGCGTG AGTGACCATA TGAGAGAACT TGAACGGATC
CGCTCGCTGG TTACCAGCCA GACAATTGCA GAACTGGAAA GAGACAGGCT TCAAACCTTA
ATCGACACCA CGAAAGCCGA GCTGGTCCAG GCGCAGTCGG CGCTAAAGGA CCGCACCATT
ACTGCCCCCT TCAAGGGCCG ATTAGGTCTA CGTCAAATCA GCGTGGGTAG CCTGGTCTCT
CCGGGGACTG TGATCACCAC ATTGGATGAT ATTTCGATAA TTAAGCTGGA TTTTTCAGTT
CCCGAGCGTT TCTTACAGTC CTTAGCAATA GGTAAAAATG TGGAAGCCAC CGCGGTAGCA
TTCCCCGATG AGCTGTTTAC CGGTCAAGTG GTCTCAATTG ATAGTCGTGT TAACCCAACG
ACCCGAGCCG TGACGGTACG CGCGGAGATC GGCAATGCTA AGCATCGACT CCTGCCCGGC
ATGCTGATGA AAGTAAAGTT GATCAAGGAG AGCAGACAAG CCTTGATTTT ACCTGAGTCT
GCCATCATCC CAATTCAGGA CAGACATTTT GTCTATCTCG TGAATGATGA AAATGTAGTG
TTTAAGAGAG AGGTTGAACT TGGACTGAGA AAGCGCGGTT GGGTCGAAGT GCTTACAGGG
GTCGAGCTGG GTGAGCAGGT GGTGATCCGG GGTATTCTCA AGGTGAGACC CGGTGACAAG
GTTAAAGTCC AATTTAGTGA GAAATTTAGT TTTTTAAAAG AAGCTAAGGT AGGGCCTACC
GCATGA
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| Protein sequence | MKKIIIMIIL VSVAWFAYQE FSPNSPSQIK KARPIANVVV AKAAMEQVRD EVEALGTSKA
YESITVTPKV TEVVTQINFN DGDSVEKGRL LVRLQDREQV ARVTVARVRV SDHMRELERI
RSLVTSQTIA ELERDRLQTL IDTTKAELVQ AQSALKDRTI TAPFKGRLGL RQISVGSLVS
PGTVITTLDD ISIIKLDFSV PERFLQSLAI GKNVEATAVA FPDELFTGQV VSIDSRVNPT
TRAVTVRAEI GNAKHRLLPG MLMKVKLIKE SRQALILPES AIIPIQDRHF VYLVNDENVV
FKREVELGLR KRGWVEVLTG VELGEQVVIR GILKVRPGDK VKVQFSEKFS FLKEAKVGPT
A
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