| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2427 |
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| Symbol | |
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| ID | 5613934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2947732 |
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| End bp | 2950827 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933338 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_001474164 |
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| Protein GI | 157375564 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000387519 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGATTTTAA CTGATCTGTC GGTAAAGCGG CCTGTCTTTG CCTCTGTGAT AAGTATTCTG
CTTATCGCTT TTGGCCTCGT CTCCTTCGAT AAGCTCCCGT TAAGAGAATA TCCCAATATT
GATCCACCCG TGGTATCGAT TCAAACGAAT TATCGCGGTG CAAGTGCATC TGTGGTCGAG
AGTCGTATCA CTCAGCTTGT GGAGGACCGT ATCAGTGGCG TCGAAGGTAT TCGCCATATT
AACTCCTCGA GTCGGGATGG GCGCTCCACT GTAACTTTAG AGTTCGATGT CGGAAGAGAT
ATTGAAGCCG CCGCTAACGA TGTTCGTGAC CGCGTCTCTG GTTTACTCAA TAACTTACCC
GAGGAAGCTG AGCCGCCAGA GGTGCGAAAA GCAAATGGTG GTGATGAAGT CATCATGTGG
TTAAATTTGG TGTCCGATCA GATGACGACA TTACAGCTGA CCGACTATGC GCGCCGTTAC
CTGACCGACA GGTTGTCTGT CATCGATGGT GTTGCCAATA TTCGCATCGG TGGTGGTAAG
GTCTATGCGA TGCGGGTTTG GATCGATAGA CAGGCACTCG CAGCGCGGGA TCTGACCGTG
GCCGATATCG AAAAAGTGCT TCGCTCTGAA AATGTTGAGC TTCCGGCGGG CTCTGTTGAA
TCAAAAGAGA GACATTTCAC CGTTCGCGTC GAACGAAGTT TTCGAACCGC CGAAGATTTT
GCCAGCCTGG TGCTCACCGA AGGGGATGAT GGTTATCTGG TAACATTAGG CGATGTAGCA
AAAGTTGAAA TAGGCTCGGA GGAGGAACGC ATCACCTTCA GGGGGAATCG TGAGGCTATG
ATAGGCTTGG GGATCTCCAA ACAATCCACA GCCAATACCC TGGACGTTGC CAGGGCGGCT
AATGCACTCG TCGATAAGAT AAACCCGACA TTACCTGCCG GTATGGAGAT TAAACGTTCA
TACGACAGCT CTGTTTTCAT CGAAGCCTCG GTAAAGGAGG TGTATCAAAC CCTCTTTATT
GCCATGTTTC TGGTTATCGT GGTTATCTAT CTTTTCTTAG GTAGCGTACG CGCCATGCTG
ATCCCCGCAG TAACGGTACC CGTCTCGTTA ACGGCAACCT TTATCGTGTT ATACGCCCTC
GGGTACACGA TTAACCTGCT GACTCTGCTA GCCATGATAT TGGCCATAGG TATGGTCGTC
GATGATGCCA TTGTGGTGCT GGAGAACATT CATCGCCGTA TTGAGGAGGG GGATTCGCCG
CTTAAGGCGG CCTATCTGGG GGCGAGGGAA GTGGCGTTTG CCGTTGTGGC CACAACGCTT
GTACTTGTTG CCGTATTTAT GCCGATCACC TTCTTAGAGG GCGATCTGGG TAAGCTATTT
AAAGAGTTTG CAGTCGCGAT GAGCGCGGCC GTGATCTTCT CGAGTATCGT CGCGCTGACC
TTGAGCCCCA TGATGTGCTC GAAACTACTT AAACCAGCGG GTGACGATCC CTGGCTTGTC
AGGAAAGTGG ATGCAGGAAT GAACTATGTA TCGGCTCAGT ATCAGGCTCT GGTTATTAAG
TTGATGCGTT ATCCGCTGAT GGTTAGCTCT CTGGTATTAA TAGCTCTGGC ATGTAGTGCA
TTTTTAGTTA AAGAGGTGCC TCAGGAGTTT GCGCCAAGAG AGGACAGGGG CTCAATGTTC
CTCATCGTAA ACGGCCCTCA AGGCGCGAGT TATGAATATA TTGAATCCTA TATGGATGAA
ATTGAAAATC GATTGATGCC TCTTGTCGAA TCGGGTGAGG TAAAACGCCT GCTGATCCGT
GCACCGAGAA GTTTCGGCCG CAGCGCCAAC TTCTCAAATG GTATGGCCAT CATAGTACTC
GAAGATTGGG CTCAAAGACG AAGTGCATTT GAGATCACCG GGGATATTCG TCGCCGTCTA
TCCGATCTCG CCGGAGTCAG AGCCTTTCCT GTGATGAGAC AGGCATTTGG CCGTGGCGTC
GGTAAACCGG TTCAATTTGT ACTGGGAGGC CCGAGCTATG AGGAGATTGC AAGGTGGCGG
GATATCATCC TTGAGAAGGC GAAAGATAAC CCTAAGCTGG TGGGGTTAGA TCATGATTAC
AAAGAGACGA AGCCACAACT TAGGGTCATC ATCGATAAAG ACAGGGCCGC CGATCTTGGT
GTCTCCATAT CCCATATCGG CCGAACATTA GAGTCTATGT TGGGCTCTCG TCTGGTGACG
ACCTTTATGC GTGATGGGGA GGAGTATGAT GTCATCATCG AGGGGAATCG GGATAATCAA
AATACCGCAT CAGATCTTGA GAATATCTAT GTTCGTTCAG ACCGGAATAA GGCATTGATC
CCTCTGTCTA ACTTAGTCAG TGTCGAAGAG TTTGCCGATG CGAGTCAGCT AAACAGATAC
AACCGTATGC GCTCTATTAC ATTGGAAGCA AACTTAGCCG ACGGTTACAG TTTAGGAGAA
GCGCTGGATT ACCTTAACGA GCTATCGAGT ACTTATCTGC CGGCCGAGGC GGTGATCAGC
TATAAGGGGC AGTCACTCGA TTATCAGGAG TCGGGCAGTT CGATGTACTT TGTCTTTATT
CTTGCACTCG GGATCGTCTT CTTGGTGCTG GCCGCACAAT TTGAGAGCTT CATCCATCCC
ATGGTTATCA TGTTAACCGT TCCTTTGGCC ACACTCGGTG CCTTGGTCGG CTTATGGTTA
ACCGGACAAA GCCTGAACAT TTACAGCCAG ATTGGTATCA TCATGTTGGT GGGGCTGGCG
GCTAAAAATG GTATCTTGAT CGTCGAATTT GCCAATCAGC TCAGGGATAA AGGGGTTGAA
TTCGAAAGGG CAATTGTGCA GGCGTCGGCG CAACGATTAC GTCCTATTTT AATGACCGGG
ATCACAACCG CTGCCGGTGC CGTACCTCTG GTATTGGCTC AGGGAGCGGG GGCTGAAACC
AGATTTGTTA TCGGGGTCGT GGTGCTATCG GGGATAGTGT TGGCCACTAT GTTCACCTTA
CTCGTGATCC CTGTGGCCTA TTCGCTATTT GCACGAAATT CAAGTTCACC CGAAGCTGTT
GCACGCGAAC TGGCAAAAGA GTTAGAAATA AAGTAA
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| Protein sequence | MILTDLSVKR PVFASVISIL LIAFGLVSFD KLPLREYPNI DPPVVSIQTN YRGASASVVE
SRITQLVEDR ISGVEGIRHI NSSSRDGRST VTLEFDVGRD IEAAANDVRD RVSGLLNNLP
EEAEPPEVRK ANGGDEVIMW LNLVSDQMTT LQLTDYARRY LTDRLSVIDG VANIRIGGGK
VYAMRVWIDR QALAARDLTV ADIEKVLRSE NVELPAGSVE SKERHFTVRV ERSFRTAEDF
ASLVLTEGDD GYLVTLGDVA KVEIGSEEER ITFRGNREAM IGLGISKQST ANTLDVARAA
NALVDKINPT LPAGMEIKRS YDSSVFIEAS VKEVYQTLFI AMFLVIVVIY LFLGSVRAML
IPAVTVPVSL TATFIVLYAL GYTINLLTLL AMILAIGMVV DDAIVVLENI HRRIEEGDSP
LKAAYLGARE VAFAVVATTL VLVAVFMPIT FLEGDLGKLF KEFAVAMSAA VIFSSIVALT
LSPMMCSKLL KPAGDDPWLV RKVDAGMNYV SAQYQALVIK LMRYPLMVSS LVLIALACSA
FLVKEVPQEF APREDRGSMF LIVNGPQGAS YEYIESYMDE IENRLMPLVE SGEVKRLLIR
APRSFGRSAN FSNGMAIIVL EDWAQRRSAF EITGDIRRRL SDLAGVRAFP VMRQAFGRGV
GKPVQFVLGG PSYEEIARWR DIILEKAKDN PKLVGLDHDY KETKPQLRVI IDKDRAADLG
VSISHIGRTL ESMLGSRLVT TFMRDGEEYD VIIEGNRDNQ NTASDLENIY VRSDRNKALI
PLSNLVSVEE FADASQLNRY NRMRSITLEA NLADGYSLGE ALDYLNELSS TYLPAEAVIS
YKGQSLDYQE SGSSMYFVFI LALGIVFLVL AAQFESFIHP MVIMLTVPLA TLGALVGLWL
TGQSLNIYSQ IGIIMLVGLA AKNGILIVEF ANQLRDKGVE FERAIVQASA QRLRPILMTG
ITTAAGAVPL VLAQGAGAET RFVIGVVVLS GIVLATMFTL LVIPVAYSLF ARNSSSPEAV
ARELAKELEI K
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