| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2426 |
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| Symbol | |
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| ID | 5613933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2946856 |
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| End bp | 2947605 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933337 |
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| Product | lysine decarboxylase family protein |
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| Protein accession | YP_001474163 |
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| Protein GI | 157375563 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1611] Predicted Rossmann fold nucleotide-binding protein |
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| TIGRFAM ID | [TIGR00725] conserved hypothetical protein, DprA/Smf-related, family 1
[TIGR00730] conserved hypothetical protein, DprA/Smf-related, family 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000109192 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | TTGATTTTGT TCTTTCCATT GAACTATCAC AATGAACTAT CACAACAAAC TATCGAGTAT
GAAAGTATGA TTGATGATTT CAAAGGCGAT GAGTCATGGC GTCTATTCAG AATTATCGCA
GAGTTTACCG AAGGCATTGA TGCCCTCTCA GATCTAGGCT TTGCCATATC GATTTTTGGT
TCAGCGAGGG TCACTCCCGA CAACATCTAT TATGAAAAAG CGGAGCAGCT CGCACGGCGT
TTAGCCCAAG AGGGGTTTGC CACCATCACA GGTGGCGGTC CTGGAATTAT GGAGGCGGGT
AATAAAGGAG CCAATGAAAA TCAGGCTAAA TCGGTTGGGC TGAACATAGA TCTCCCCATG
GAGCAGTCAC CTAACCCCTA TCAAAATATC TCCCTGAATT ATCGCTATTT TTTTGCCAGA
AAAGTCATGT TTGTCAAACA CTCCATGGGG TATGTCTGTA TGCCAGGAGG GTTTGGCACC
TTCGATGAGT TCTTTGAAGC TCTGACCTTA TTGCAGACCA ATAAAATCTA CCCCATACCC
ATCGTGCTTT ACGGCACTGA TTTTTGGCAG GGACTATTAG ACTGGATGGC GGCTCAACCC
CTTAAACATG GCCTCATCTC ACCGGAAGAT CTGGAGTTGC TCACAGTAAC CGATGATATT
GAAGAGGTGA TATCTATCAT GGTGCAACAT AGAAAGTATA AGATGCTGAA AATAAGGCGT
GCCAAAACGG TCTATTATCC TGAAAACTAG
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| Protein sequence | MILFFPLNYH NELSQQTIEY ESMIDDFKGD ESWRLFRIIA EFTEGIDALS DLGFAISIFG
SARVTPDNIY YEKAEQLARR LAQEGFATIT GGGPGIMEAG NKGANENQAK SVGLNIDLPM
EQSPNPYQNI SLNYRYFFAR KVMFVKHSMG YVCMPGGFGT FDEFFEALTL LQTNKIYPIP
IVLYGTDFWQ GLLDWMAAQP LKHGLISPED LELLTVTDDI EEVISIMVQH RKYKMLKIRR
AKTVYYPEN
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