| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2424 |
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| Symbol | |
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| ID | 5609835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2945609 |
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| End bp | 2946346 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933335 |
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| Product | 3-deoxy-manno-octulosonate cytidylyltransferase |
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| Protein accession | YP_001474161 |
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| Protein GI | 157375561 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase |
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| TIGRFAM ID | [TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000116864 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACGTAA CTCTGTTAAT CCCAGCTCGC TATGGCTCAA GCCGTTTCCC TGGCAAGCCT
TTGGCGCCGA TTAACGGTAA GCCAATGATC CAGCATGTTT ATGAACGTGC ATCTTTGGCA
AAAGGCTTAA CCGCTATCTA CGTTGCAACC GATGATGACC GCATTAAAGA CGCTGTCGAA
GGATTCGGTG GGAAAGTAGT CATGACGAGT CCTGACGCCG CTTCTGGTAC AGATCGTATC
GAAGATGCCA TTACGCAATT AGGCCTGAAA GATGATGATC TTGTGGTTAA CCTGCAAGGC
GATCAGCCCT TAATCGACCC CATCTCTATC GAGCAGATAA TCAGCCTGTT TGAACGCCAT
CCAGGAGAAT TTGGAATGGC AACCTTAGGA TTTGAGATCA CTGAAAAATG TGAACTCGAC
GATCCTAAGC ACGTTAAAAT GGTATTCGAT AACGAGTTTA ATGCACTCTA TTTTTCTCGT
GCACGTATCC CGTTCGGCAG AGATACCAAC GACTATCCTG TTTATAAGCA TTTAGGTGTC
TACGCTTACA CCAGAAGTTT TATCTCTACA TTTGCTAAGT TACCCCTCGG ACGTTTAGAA
GATTTAGAAA AACTTGAGCA ACTCAGAGCG CTCGAACATG GCTATAAAAT CAAGGTCGCT
ATCAGTGCTT TTGATTCTCC GGAAGTTGAT ACCCCCGAAG ATATTCGAGT CTGTGAGTCT
CGTTTAGCGG TCGATTAA
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| Protein sequence | MNVTLLIPAR YGSSRFPGKP LAPINGKPMI QHVYERASLA KGLTAIYVAT DDDRIKDAVE
GFGGKVVMTS PDAASGTDRI EDAITQLGLK DDDLVVNLQG DQPLIDPISI EQIISLFERH
PGEFGMATLG FEITEKCELD DPKHVKMVFD NEFNALYFSR ARIPFGRDTN DYPVYKHLGV
YAYTRSFIST FAKLPLGRLE DLEKLEQLRA LEHGYKIKVA ISAFDSPEVD TPEDIRVCES
RLAVD
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