| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2419 |
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| Symbol | |
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| ID | 5613729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2940463 |
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| End bp | 2941140 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933330 |
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| Product | peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin |
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| Protein accession | YP_001474156 |
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| Protein GI | 157375556 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1876] D-alanyl-D-alanine carboxypeptidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.128484 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000107328 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGCCGACGA CATCACCTTA TGGCCTTGTA CATGCTGATT TAGTTGACTA TCAAGGCCAT
CTTTTAGAAG CTGAAACCGC TAAAGCCCTC GAGAAGATGG CGCAGGCGGC GAGCCTGGAT
GGGATAAAAA TCAAGGTTTG CTCCGGCTAC CGCGACTTTT CCAGACAGTT GAAAATCTGG
AACGATAAAG CTCGGGGTAA ACGAACAGTC CTCGACAAAG ACTCACAACC CATCGAGTTA
AATCAAAAGA GTGATAAAGA GATCGTAGAT CTCATCATGC TCTGGTCTGC TCTGCCCGGC
ACATCCAGGC ATCATTGGGG CACTGATATC GATGTTTATG ATGAAAATGG CATCGAACGT
ACTCAATTAC AGCTGGTCTC CTCCGAATAT ACCTCTTCCG GACCCTGTGG GAAGCTGCAT
CGCTGGCTGG TTAAACACGC CGGGGATTTT GGCTTCTATT TTCCCTTCCA GGAAGGCTTA
AGTGGTGTCA GTGCCGAACC TTGGCATCTG AGTTATTACC CTGTCTCATC TGACATTCTC
AGAGCGTTCG ATGTTGACGC ATTAAAGCAA ATTCTGAATG ATGCTGAGCT CGAACTTAAA
GCCGAGGTCA TGGTGAGAAT TGAATCTCTT GTCAACGAGT ACGTCTATAC TATTGCTCCT
CCACCCAATC AACTATAA
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| Protein sequence | MPTTSPYGLV HADLVDYQGH LLEAETAKAL EKMAQAASLD GIKIKVCSGY RDFSRQLKIW
NDKARGKRTV LDKDSQPIEL NQKSDKEIVD LIMLWSALPG TSRHHWGTDI DVYDENGIER
TQLQLVSSEY TSSGPCGKLH RWLVKHAGDF GFYFPFQEGL SGVSAEPWHL SYYPVSSDIL
RAFDVDALKQ ILNDAELELK AEVMVRIESL VNEYVYTIAP PPNQL
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