| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2417 |
|---|
| Symbol | |
|---|
| ID | 5613727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2938992 |
|---|
| End bp | 2939336 |
|---|
| Gene Length | 345 bp |
|---|
| Protein Length | 114 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640933328 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474154 |
|---|
| Protein GI | 157375554 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1393] Arsenate reductase and related proteins, glutaredoxin family |
|---|
| TIGRFAM ID | [TIGR01617] transcriptional regulator, Spx/MgsR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.156213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000935977 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | TTGACGCTTT TCGGCATTAA AAATTGTGAT ACGGTCAAGA AGGCCCGTAA ATGGATTGAA
GCCAACGATC TTACTATTCC TTTCCATGAT TTTCGTGTTG ATGGCCTGAC TAAAGATCAA
GTTGCAACTT GGGCTGCCTA TTTAGGCTGG GAAAACCTGT TCAACAAGCG TAGCACCAGC
TATAGAAACC TCAGCGATGA AGACAGATCC AATATTGACG AAGCGAAAGC CATCGAGTTG
ATGCTGACGC ATCCGACACT GATCAAGAGG CCCGTTTTGG TCACGAATGA TAAAGTCATG
GTCGGCTTTA AAGAATCCGA GTATAAAGCG TGGTTTAACC TATGA
|
|---|
| Protein sequence | MTLFGIKNCD TVKKARKWIE ANDLTIPFHD FRVDGLTKDQ VATWAAYLGW ENLFNKRSTS
YRNLSDEDRS NIDEAKAIEL MLTHPTLIKR PVLVTNDKVM VGFKESEYKA WFNL
|
|---|
| |