| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2415 |
|---|
| Symbol | |
|---|
| ID | 5609730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2936336 |
|---|
| End bp | 2938036 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640933326 |
|---|
| Product | phosphoenolpyruvate-protein phosphotransferase |
|---|
| Protein accession | YP_001474152 |
|---|
| Protein GI | 157375552 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1080] Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) |
|---|
| TIGRFAM ID | [TIGR01417] phosphoenolpyruvate-protein phosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.156306 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000176148 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACTT CGGGAATTGT CGTTTCATCC GGAATCGCAT TTGGCCAATC GAGAATACTG
CACCAGCATA GCACTGAATT AGACTATCAA CTCCTTCCTT TATCCAATGT AAAAGCGGAA
CAAATAAAAT TATCTCACGC TATCGAACAA GTGTTGCAGC GATTACAGAT CGGATTACAC
AGACTCGAAG CGGATTGCGA CAACTACCAA CTGATTGAAG CCGATATTCT ACTACTCGAA
GATGAAGAGT TAACTCATCA ACTGTTAGCC AGTATAGGCG AGCAACAGTT TACCGCCAGT
GTGGCTGTGC AGCGGGTCTT TGCTCAACAG GCTAACCAAA TGCTGGCCAT GGAGGACCCT
TATCTGGCTA ACAGAGCCGA AGATGTCCTC TGCCTCGGCA GTCGCTTAAT CGCAGCCATC
AATGGCAGCA TAGAACATGA TCTCGAAAAC TTAACTTACC CCACCATATT ACTCGCCACT
GACTTAACCC CCGCCGAATT TGCAACGCTG CCGTTAGATA AGATAAATGG CATTGTGTTG
AAAACCGGTG GTCTCACGAG CCACACGGCT ATTTTAGCCA GAAGTGCCGG GATCCCGGCA
CTGCTGAGTT GTGATTTCGA CGAAGAGCTG ACCAACAATC AACAAATAGC ACTCGATGCA
TTATCTGGCC GGCTGCATGT TAATCCAGAC CAAGAGGTTA TTAACCGTTT AGAACGGATC
GGATCGGAAG ATAAGTTAAG AAAGAGCAGA TTACAAAAAT TTAAAGACCT CCCTACAGAA
ACCCGCGACA AACATAAAAT TTCACTTTTG GCGAATGTGG GTTCTTTAAG TGATATAAGC
CATGTTTCTG ATGTGGGTGC CGATGGCATA GGATTATTCA GGACTGAGTT CATGTTGATG
AACGCAAGCC ACATGCCCAG TGAAGATGTT CAATACGGCC TATATTGTGA TGCCTTACAA
CTGCTCGATG GCAAAACCTT TACCATCAGA ACATTTGATA TCGGGGCAGA TAAAGAACTT
CCCTGCCTCT CTCTGCCTCA AGAAGTGAAT CCGGCATTAG GATTTCGTGG TGCACGTTAC
TCCCTCGCTC ATACCGATCT GTTTAAGAGT CAATTAAAGG CGGTACTTCG CGCCGCTAAC
CATGGCTCTA TCAGGTTGAT GTTTCCGATG ATAAATCAAG TTGAAGAGTT AGATGAGCTC
TTTAACATGA TTGAAGAGTG TAAAGCGGAG CTGGTAGAGG AAGAACGGGG CTTCGGTGAG
TTAAGTTATG GAATCGTGGT TGAAACCCCG TCGGCAGTCT TAAACCTGAC CTCCATGTTA
CCGCTTCTGG ATTTCATCAG TATCGGGACC AATGATCTTA CTCAATATTC GATGGCCGCA
GATAGAACCA ACCCTGATTT AACCAAAATC TACCCCTCCT TATCTCCCTC AATTTTAAAG
CTGATAAAGA TGACAATCGA TGCGGCAAAA GATGCGAGTA TTCCTGTCTC ACTTTGCGGC
GAACTGGCGA GCAACCCCCT CGTTGCACCT ATTCTTATCG GAATGGGAAT CGATGAATTA
AGTGTAAATT TAAACTCATT ACTGGAACTA AAATCGGCAA TTTGTAATAA CGAACTTGCC
ACTTATATCA AATGCAGTGA AGAGGCATTA TTGATACAAC GCATAGATGA ACTAAATCAT
TACGTATCGC ACTGTTACTA G
|
|---|
| Protein sequence | MSTSGIVVSS GIAFGQSRIL HQHSTELDYQ LLPLSNVKAE QIKLSHAIEQ VLQRLQIGLH
RLEADCDNYQ LIEADILLLE DEELTHQLLA SIGEQQFTAS VAVQRVFAQQ ANQMLAMEDP
YLANRAEDVL CLGSRLIAAI NGSIEHDLEN LTYPTILLAT DLTPAEFATL PLDKINGIVL
KTGGLTSHTA ILARSAGIPA LLSCDFDEEL TNNQQIALDA LSGRLHVNPD QEVINRLERI
GSEDKLRKSR LQKFKDLPTE TRDKHKISLL ANVGSLSDIS HVSDVGADGI GLFRTEFMLM
NASHMPSEDV QYGLYCDALQ LLDGKTFTIR TFDIGADKEL PCLSLPQEVN PALGFRGARY
SLAHTDLFKS QLKAVLRAAN HGSIRLMFPM INQVEELDEL FNMIEECKAE LVEEERGFGE
LSYGIVVETP SAVLNLTSML PLLDFISIGT NDLTQYSMAA DRTNPDLTKI YPSLSPSILK
LIKMTIDAAK DASIPVSLCG ELASNPLVAP ILIGMGIDEL SVNLNSLLEL KSAICNNELA
TYIKCSEEAL LIQRIDELNH YVSHCY
|
|---|
| |