| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2414 |
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| Symbol | |
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| ID | 5609729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2935904 |
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| End bp | 2936161 |
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| Gene Length | 258 bp |
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| Protein Length | 85 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933325 |
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| Product | HPr family phosphocarrier protein |
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| Protein accession | YP_001474151 |
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| Protein GI | 157375551 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1925] Phosphotransferase system, HPr-related proteins |
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| TIGRFAM ID | [TIGR01003] Phosphotransferase System HPr (HPr) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.700506 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000385306 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTATGAAA AATCAGTCAC AATTACAGCT AAGCATGGTA TTCATACTCG CCCGGCTGCG
CTGCTTGTCA AGGAAGCCAG AACCTATGAC TGTGATGTTC TGGTGGAATG TAATGGTAAA
CAGGCGAGTG CAAAAAGTTT ATTTAAGTTA CAAACCTTAG GTTTATACCA TGGGATGACG
GTAAAGGTGC TGGCAGATGG ACCTCAGGCG GAGCAAGCCG TTGAGAAAGT ATCTGAACTA
TTAATCACAC TTAGCTAA
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| Protein sequence | MYEKSVTITA KHGIHTRPAA LLVKEARTYD CDVLVECNGK QASAKSLFKL QTLGLYHGMT
VKVLADGPQA EQAVEKVSEL LITLS
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