| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2410 |
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| Symbol | |
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| ID | 5609770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2931924 |
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| End bp | 2932550 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933321 |
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| Product | DNA-directed DNA polymerase |
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| Protein accession | YP_001474147 |
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| Protein GI | 157375547 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0597525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000352729 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACGACTC GCGCAGCCAA CTCAGTCATT GTTCTCGATT TCGAGACCAC AGGTCTCTCC
CCTAACCAAG GCGATCGCGC CATTGAGATT GGTGCCGTAA AGTTACAAGA CGGAATTGTC
GTCGATACAT TTCAAGAGTT AATGAATCCG GGCTTTAGAG TCAGTGGTTT TATCGAAGGT
TACACGGGCA TAACAAATGC CATGTTAAAT TCAGCACCTC CCTGCAATGA AGTCATGGCT
CAATTTGCAG GTTTCATCGG TAATGATAAT TTAGTCGCTC ACAATGCGTC ATTCGATAAG
CGATTTCTCG ATGCCGAACT CGATGGAATT GGTAGAACTT ATGGTGGCGA ATTTGCCTGT
TCTATGTTGA TTGCCCGCAG GCTATATCAA GCCGCCCCTA ATCATAAACT GGGGGGACTC
GTCGAATATA AACAGATTGA GAATGACGGT GTTTTTCACA GGGCACTCGC CGACTCAGAA
GTGACAGCGA AACTCTGGCT TAAAATGCTT GAGGATATGC AAGATGACTA TCAAATAGCA
TCACCGAGCT TCAACTTGAT GCAGCAACTC TCTAAGAAGT CAAAGTCTAC GGTCCACACA
TTTTTAACCT CAGGTGGCCG GCGCTAA
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| Protein sequence | MTTRAANSVI VLDFETTGLS PNQGDRAIEI GAVKLQDGIV VDTFQELMNP GFRVSGFIEG
YTGITNAMLN SAPPCNEVMA QFAGFIGNDN LVAHNASFDK RFLDAELDGI GRTYGGEFAC
SMLIARRLYQ AAPNHKLGGL VEYKQIENDG VFHRALADSE VTAKLWLKML EDMQDDYQIA
SPSFNLMQQL SKKSKSTVHT FLTSGGRR
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