| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2408 |
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| Symbol | |
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| ID | 5613467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2927897 |
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| End bp | 2929039 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933319 |
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| Product | cupin 4 family protein |
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| Protein accession | YP_001474145 |
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| Protein GI | 157375545 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2850] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0501658 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000275258 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAACTTG AGTTAGGTGC ACTGACACCG GAAATCTTTA TCAGAGACTA TTGGCAGAAG
AAACCTCTGG TTATTCGACA AGGGTTCAAT AACTTCAAAG ACTTGCTTAC ACCTGAAGAG
ATGGCCGGAT TGGCATGTGA TGAGATCGTT GAATCACGTA GGGTATACAA GAGTGAAGGT
GAGTGGCAGG CCGAGTTTGG GCCTTTTGAG AGCTATGAGC ACTTGGGGGA GTCAGACTGG
ACCTTAGTGG TTCAGGCACT CAATAATTGG TTACCCGATG CTGAGAAACT GATTCAGTGT
TTCGACTTTA TCCCCAGATG GCGCTTCGAT GATGTGATGG CGAGTTATGC CACTCCAGGT
GGCGGTGTCG GGCCCCATAT TGATCTGTAT GATGTATTTA TATGTCAAGG CTCGGGTCGA
CGTCGCTGGC GAGTTGGTGA CCGTGGTCCA CATAAGGAAT TTGCGGCCCA TCCTGCATTA
CTGCATACAG AAGCCTTTGA TCCGATTATT GATGTAGAGT TATTACCGGG CGATATCTTG
TATCTACCAC CTGGTTATCC TCACGACGGG ATCACTTTAG AGCCATCGAT GAGCTTCTCT
GTCGGTTATC GAACTGCTTC GGCAAAAGAT ATGGTCAGTG CGTTAGCCGA CCACCTTATC
GACAGTGAAT TAGGCTGTGA GCAGATAGAA GATCCTGACA GAGAAGTCAG CCAACAAAGC
GGGCGAGTTA ACGCAACTGA CTTAGCGAGA ATTAAAGCGC AATTGCTGGC AACTCTGGAT
GATAAATTGG TCAGTGAGTT TTCGGGGCGT TACCTGACCA ACTCAAAATG TGAACTGGAC
CTGCCTGACG AACATCTGGG ATTTCAGTGT GACGATGTGC TTGATATGTT AAATCAGAAT
GAGTTAACCA GATTAGGTGG ACTCAGAGCA CTTTATTTCG ACACTTCTGT ATCGCAGGGG
AGCTTCTACA TCAATGGGGA AGAGGTGACT TTCCCCCTGG AGCTTGCGGA CGCGATACCT
GTGTTATGTG ACAATCAGAT GCTGAGCGCC ACCAGTTTAG CGCCCTGGTT ATCTAATCAG
ACATTTATTG AAAAGTTAAC AGATTGGATT AATAGCGGAT ATTGGTATTT CGAAGAGAGT
TGA
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| Protein sequence | MQLELGALTP EIFIRDYWQK KPLVIRQGFN NFKDLLTPEE MAGLACDEIV ESRRVYKSEG
EWQAEFGPFE SYEHLGESDW TLVVQALNNW LPDAEKLIQC FDFIPRWRFD DVMASYATPG
GGVGPHIDLY DVFICQGSGR RRWRVGDRGP HKEFAAHPAL LHTEAFDPII DVELLPGDIL
YLPPGYPHDG ITLEPSMSFS VGYRTASAKD MVSALADHLI DSELGCEQIE DPDREVSQQS
GRVNATDLAR IKAQLLATLD DKLVSEFSGR YLTNSKCELD LPDEHLGFQC DDVLDMLNQN
ELTRLGGLRA LYFDTSVSQG SFYINGEEVT FPLELADAIP VLCDNQMLSA TSLAPWLSNQ
TFIEKLTDWI NSGYWYFEES
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