| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2407 |
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| Symbol | |
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| ID | 5613466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2926874 |
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| End bp | 2927833 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933318 |
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| Product | putative carbon-nitrogen hydrolase |
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| Protein accession | YP_001474144 |
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| Protein GI | 157375544 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0388] Predicted amidohydrolase |
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| TIGRFAM ID | [TIGR03381] N-carbamoylputrescine amidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.213544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00209707 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGATTC ACCTTTGTTC GCTTGAAGCT CAATCCCGAA AGGCCAATAT TCAACAGAGG
CAGTGTAAGA TGTCAAAATG TGTAAAGTTT GCAGCGGTGC AACTCAGCAT CAGCTGGGAT
CTGGATAGTA ATTTATCTAA TGCTACCCAG GCCATCACAG ATGCGGCGCA GCAAGGTGCG
CAGGTTATCG TATTACAGGA GCTGTTTGCC GCCCCCTACT TTTGTAAGCA GCAGAGGGCG
AAGTATTTCG AATTAGCCGC AGAGCGTGAA AAACATCCAT TAATAGATAA GATGAGTCAG
CTTGCTGAAT CACTCAAGGT GGTGATCCCG GTCAGTTATT TTGAAAAATC AGGCAACACA
TTTTTTAACT CTATGGTGAT GATCGATGCC GATGGACGAA TTTTGGATAA CTACAGAAAA
TCTCATATAC CCGATGGTCC TGGTTACTGC GAAAAATATT ACTTCAGCCC AGGAGACACA
GGCTTCAAGG TATGGCAGAC ACGATATGGG TGTTTCGGTG CAGGGATCTG TTGGGATCAG
TGGTTCCCCG AGTTAGCCCG CAGTCTGACG CTCGCGGGAG CCGAAGCCAT ATTCTACCCC
ACCGCGATAG GCTCAGAACC ACAAGACCTT AGCTTAGATT CCAGAGGTCA TTGGCAGCGA
ACGATGCAAG GTCATGCTGC AGCAAATTTA ATTCCTGTGA TAGCGGCAAA CAGAACCGGC
GTCGAAACAG ATGACGGGTT AGAGACTCAC TTCTATGGCT CATCATTTAT TACCGACCAT
ACGGGAAAAA TATTAGCCGA AGCGGGCCGA AGCAGTGAAG AAATCATCTA TGCAGAGATA
GATCTGCAGG CAAGTAGCCA AGCACGCCAT AGTTGGGGCC TATTCAGAGA CAGGCGCCCC
GAACTTTACT CGCGTTTATT GTCATTAACG GGTGAAATCG AATCACTTGA GAGGAGATAA
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| Protein sequence | MLIHLCSLEA QSRKANIQQR QCKMSKCVKF AAVQLSISWD LDSNLSNATQ AITDAAQQGA
QVIVLQELFA APYFCKQQRA KYFELAAERE KHPLIDKMSQ LAESLKVVIP VSYFEKSGNT
FFNSMVMIDA DGRILDNYRK SHIPDGPGYC EKYYFSPGDT GFKVWQTRYG CFGAGICWDQ
WFPELARSLT LAGAEAIFYP TAIGSEPQDL SLDSRGHWQR TMQGHAAANL IPVIAANRTG
VETDDGLETH FYGSSFITDH TGKILAEAGR SSEEIIYAEI DLQASSQARH SWGLFRDRRP
ELYSRLLSLT GEIESLERR
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