| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2405 |
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| Symbol | |
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| ID | 5613011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2924581 |
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| End bp | 2925678 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640933316 |
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| Product | agmatine deiminase |
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| Protein accession | YP_001474142 |
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| Protein GI | 157375542 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2957] Peptidylarginine deiminase and related enzymes |
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| TIGRFAM ID | [TIGR03380] agmatine deiminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.761895 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0406266 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCACGTA CATTAGACTC CACACCGCGC CAGGACGGCT TTCGTATGCC CGGAGAGTTT
GAACCCAAAA AAGGTTGTTG GCTCGGTTGG CCTGAGCGCT GTGACGTTTG GCGTAACGGT
GCTAAACCTG CACAAAAGGT CTGGGTTCAG ATATGCACCG CCATTGCACA AAGCGAGCTG
GTGACAGTCT GTGTTTCCCA AGCTCAGTAT GAAAACGCCC GTGCCATGTT ACCCGATACG
GTTCGCGTGG TAGAAATGAG CACCAATGAC GCCTGGTTCA GGGACTCGGC CTGTGCTTTT
CTGGTCAACG ATAGAGGGGA TGTCAGGGGT ACCGATTGGA CATTTAATGC TTATGGAGGA
CTCAATGGCG GGCTCTACTT CCCTTGGGAC AGTGACGATC AGATAGCGCA GAAGATCCTT
GAAATAGAAA ACCTCGATAG ATACCGCTCC CCATTGATTG CCGAAATGGG GGGCATTCAA
TGTGACGGAC AAGGCACTCT ACTCACCACG GAGCAATGCC TGCTCAATCC CAATCGAAAC
GGACATCTGA GCAAAGAAGC AGTCGAGCAG CAGTTAAGGG ATTATATGGG AGTCGAGAAG
ATCATCTGGT TGCCACGAGG CTGCAAGTTT GATGAAACCG ATGGCCATAT CGACGATCTT
GCCTGTTGGG TTGCCCCCGG AGAACTTCTG CTGCAATGGA CGGACGATGA AAGCGATCCC
CAATATGAGA TCTATCAAGA AGCCTATGAG ATCTTGAGTC GCAGCACCGA TGCCAGAGGC
CGTTCAATTA AAATCCATAA GATCCCGCAG CCTAAAGCGC TTGAGTGGAC AATAGAGGAA
GCCTCCGGCC TTGATGATGC CACAGGGACC CATGCCCGCG TCGCAGGCAC TAAAATCTGC
GCCTCCTACA TTAATTATTA CATAGGTAAC GACATTATCA TGGTCCCCGC CTACGACGAT
CCCATGGACG AACCCGCTCA GGCGGTACTC AGAACCCTGT TTCCAAAACA TAAGGTGATC
GGGATCCCAA ATGCTCGTGA GATATTGCTT GGTGGTGGCA ATGTCGCCTG TATCACCCAG
CCACAATACG CAGGTTAA
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| Protein sequence | MPRTLDSTPR QDGFRMPGEF EPKKGCWLGW PERCDVWRNG AKPAQKVWVQ ICTAIAQSEL
VTVCVSQAQY ENARAMLPDT VRVVEMSTND AWFRDSACAF LVNDRGDVRG TDWTFNAYGG
LNGGLYFPWD SDDQIAQKIL EIENLDRYRS PLIAEMGGIQ CDGQGTLLTT EQCLLNPNRN
GHLSKEAVEQ QLRDYMGVEK IIWLPRGCKF DETDGHIDDL ACWVAPGELL LQWTDDESDP
QYEIYQEAYE ILSRSTDARG RSIKIHKIPQ PKALEWTIEE ASGLDDATGT HARVAGTKIC
ASYINYYIGN DIIMVPAYDD PMDEPAQAVL RTLFPKHKVI GIPNAREILL GGGNVACITQ
PQYAG
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