| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2394 |
|---|
| Symbol | |
|---|
| ID | 5612580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2915988 |
|---|
| End bp | 2917064 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640933305 |
|---|
| Product | spermidine/putrescine-binding periplasmic protein |
|---|
| Protein accession | YP_001474131 |
|---|
| Protein GI | 157375531 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAA TACCAAGGAT GAGCATACTT TTGAGATTTA ATCTTACTCT GTGTGTAGCA
GTGATTCTTC TCTCTTTGTT TACTCAGGCT TCCCATGGCG CTGAGAGAAC GCTGACGATT
CTCAATTGGA GCGAATATCT GGATCCGGAC CTTGTTCTTC GTTTTGAACA AGAATATCAG
GTTAAAATCT CCGAAATTTA TTATGGCTCA GATGAGCAAC GCTCAGATCT TCTACTACAA
AATAACGCCG ATGGTTACGA CCTCATTCTC TCTTCGGGTG TCGATCTGCA AAGTTATATT
AATCGTGGCT GGATTGCCAA GCTAGAAACC GACAAACTCC TTTTTCTTGA GCAATTGAGC
CCTAAATGGA GAAGCGCATT TCCCGGGGCG GTGGAATATG CCATTCCTTA TTTTTGGGGA
ACCGTAGGTA TCGTCTATCG CCATGATGTC ATCAAAGAGC CTATCACTCA TTGGAAACAG
CTATACAGCC CTGCTCCTGA CTTAAAAGGC AAGCTCGGTA TGATTGACGA GCCTCGCGAT
TTGATTGGTA TGGGGCTTAA ATCATTGGGA TACTCGGCTA ATAGCGAAGT GAGTTTACAG
CTCAATGAAG TTGAAGAAGT GCTGCAATCA CAAAAGGCTA TGGTTAATTC TTATATCTAT
ATGACCCTCG ATGAACACTC GCCCATAGTG ACCGGGGAGA TATTAGCGTC CATGATCTAC
AACGGTGATG CCCTGATGGT AAAGGAGCAC AGCGAAAACC TGACCTTTGT GTTGCCTGAA
GAGGGAGGAG CAATTTGGGT TGATTACCTC ACCATAGGTG CAAAGGCGAA AGAACCTGAC
CTGGCCTATG CTTTTCTTAA TTTTATTAAT CAAGCTGAGC ATGCGGCTCA ACTCGCTCAA
TACGTCTATT ACGCAACCCC CAATCTGGCG GCCGAAAAAC TATTGCCCGA TGAGTTTTTG
AACGACAAGG TGATCTATCC CGATGCTGAT AGCCTTAAAA ACTCTGAGTT CTATAAGCCA
CTATCCGCCA GGAGCCAGCG TAAACGTAAC ATTATCAGCA TAAATGTTTT GCCATAG
|
|---|
| Protein sequence | MDLIPRMSIL LRFNLTLCVA VILLSLFTQA SHGAERTLTI LNWSEYLDPD LVLRFEQEYQ
VKISEIYYGS DEQRSDLLLQ NNADGYDLIL SSGVDLQSYI NRGWIAKLET DKLLFLEQLS
PKWRSAFPGA VEYAIPYFWG TVGIVYRHDV IKEPITHWKQ LYSPAPDLKG KLGMIDEPRD
LIGMGLKSLG YSANSEVSLQ LNEVEEVLQS QKAMVNSYIY MTLDEHSPIV TGEILASMIY
NGDALMVKEH SENLTFVLPE EGGAIWVDYL TIGAKAKEPD LAYAFLNFIN QAEHAAQLAQ
YVYYATPNLA AEKLLPDEFL NDKVIYPDAD SLKNSEFYKP LSARSQRKRN IISINVLP
|
|---|
| |