Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2372 |
Symbol | |
ID | 5611424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2886343 |
End bp | 2887167 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640933283 |
Product | Flp pilus assembly protein CpaB-like protein |
Protein accession | YP_001474109 |
Protein GI | 157375509 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3745] Flp pilus assembly protein CpaB |
TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.267894 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.976652 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAATA AAACCATATT ATTCGTCCTA TTGTCGTTAA TATTTGGCGT TGCAGCCGTT TTCCTTGCAC AAAGTTGGTT GAAAACTAAT ACCGAGGCCG TTAATCCGCA AGTTTCAACG AGTGTGATCA CTATGGCCAC ATTAGTTCCG CTTGGAACAA TACTTGAGCG AAAACATCTT ATACTTACTC CTATGCCAAA TACCGTTATC CCGGAAACTG CGATTAAAAC GTTTGAAGGT GCAGAGGGTA TGGTCGTTAA GCAGAACCTG TATGCGGGAG AGGTGCTTCG CAGTGAAAGG ATAACTGTAA AAGGTGAGGG AAGCACATTA GCCAGCTTGA TATCTCCGCA AATGCGCGCC GTCACCATTA GGGTTAACGA TGTGGTTGGT GTTGCAGGTT TCTTGCTCCC GGGTAATCGT GTTGATGTAC TCAACCTGTT TAAAAGAGGG GGGCGTCTGC AAACTGATGT TGTATTGGCG AACGTTAAAA TTCTTGCAAT CGATCAACGC TCTTCAAATG ATGAAAATAA GCCTAAATTG GTTCGTGCAG TGACTCTCGA ACTCAATTTA GAGCAGGCTG AAGTGTTAAT GATCGCAAAA GGGCGTGGCA AGCTTCAATT AGCGCTAAGA AATCCGAATG ATTCAACAAA AGTTGAACTA GCATTAATTA ATGAGGCTAA AGATACAATC GATAGCGAGC CCACGCCAGC TGTCAGGCCT ATGCCTGTCG TATCTAAAGA CATAATTCAA GTTTCAACTA AAACGAATTC AAAAGTCTAT CTGCTTAAAG GAATGCAAGA GCAGGTAATT AAAGTGAGCA ATTAG
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Protein sequence | MNNKTILFVL LSLIFGVAAV FLAQSWLKTN TEAVNPQVST SVITMATLVP LGTILERKHL ILTPMPNTVI PETAIKTFEG AEGMVVKQNL YAGEVLRSER ITVKGEGSTL ASLISPQMRA VTIRVNDVVG VAGFLLPGNR VDVLNLFKRG GRLQTDVVLA NVKILAIDQR SSNDENKPKL VRAVTLELNL EQAEVLMIAK GRGKLQLALR NPNDSTKVEL ALINEAKDTI DSEPTPAVRP MPVVSKDIIQ VSTKTNSKVY LLKGMQEQVI KVSN
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