| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2371 |
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| Symbol | |
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| ID | 5611891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2884851 |
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| End bp | 2886302 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933282 |
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| Product | flp pilus assembly protein, secretin CpaC |
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| Protein accession | YP_001474108 |
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| Protein GI | 157375508 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.463831 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.668719 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACGAA CAATAACCAG AATGGTTACG ATAGCATGTT GTTTTTTAAC TGTATGTCTT
GTTTTTATCA ATTTTTCAGT CAACGCTGGC GGTCCAACTG GAGCGAGCCG GGATATCAAA
CATATCCCGA TTTTTAAGTC ACGGGTATTA AAACTAAAGC AAGCGATTCA TCGGGTATCT
GTAGGTAATC CCAATATAGG TGATATCAAA CTTCTTCCTA ATAATGAATT GTATGTTCTG
GGAAAAAAGT TGGGTAGTAC CAATATCATG GTCTGGGATA AGAATGAGCA GTTAGTCGAT
GTGATCGATA TTGAAATTAC CCATGATCTC AATGGATTGA AAACCCGCTT GCATGAGTTT
CTGCCGGGGG AAAAATTGGG TGTACAAACC TCACAAGGCC AATTGCTGAT AAGTGGCCAA
GCGAGTAACC TCCAAAAAAT GAATACGGCG GTCGAACTGG CTCAGGCCTA TGCAGATGCC
GCATCTGTTT CTAAAGTGAA AAGTACGGTG TTAAACATGA TGACAGTAGG GGGAGACCAT
CAGGTTATGC TCGAAGTCGT TATTGCCGAA GTTCAAAAAG AGGTCGCCCG TCAATTTGAT
TCAAAATTCT TTATCTTTAA CAAAGGCGAT AAAGGGTTTA TTGGTACGGC TGGTGCCGGT
GGAACCTTCG ATCTTGACCC CGCTGCAGCC ATAGACAGTC GTGGATTCTT TGCTCGTTAT
CTCGACGGCA ATTTAATGAT GAACTTTGCT CTCGATGTTG CTAAACAACA TGGTCTTGCT
AAAGTCCTGG CTGAGCCTAA TGTAACGGCA ATGAGCGGAC AATCGGCAGA GTTCTTATCG
GGGGGAGAGT TTCCTATTCC GGTTCCGGGC ACCAATGGTT CGACAACAAT ACAGTACAGA
GATTTTGGTG TAGGCGTTAA GTTTGTGCCA TCGGTGTTAG ATTCAGGGCA AATTAATCTT
AACCTCAATG TAATGGTAAG TGAAGTCAGT AACGCTAACT CGGTTACACT TTCCGGTGGC
TCTAATACCG CTCTTGTTGT GCCTTCAATA GTTAAGAGAA CGACAGCAAC AACCGTTGAA
TTGGCCGATG GACAAACCAT CGCAATCAGT GGACTCATTA GTGACACTTT ACGTGAAAAT
ATCGATAAAT TACCGGGGCT CGGAGATATT CCCATCTTAG GTCAGCTATT TACCAGTAAA
AGTTTTCAGA GTGGACAAAG CGAACTGGTT ATTCTGGTAA CACCCAGATT AGTTAGACCG
TTTAATAAAA AGCAGATATC ACTGCCAACC GATGATTTTG TCTTGCCATC TGATATGGAG
TTCTATCTGT TAGGTAAAAT GTCGCATAAG CAGTCCGAAC AAGAGAAGCA TGAAACGCCT
TACGAAGCGA TAGAGTCCGA TGCGAAAATT GATGACAGCG GAACTCAGCA AAAATATGGA
CATTCACTAT AG
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| Protein sequence | MPRTITRMVT IACCFLTVCL VFINFSVNAG GPTGASRDIK HIPIFKSRVL KLKQAIHRVS
VGNPNIGDIK LLPNNELYVL GKKLGSTNIM VWDKNEQLVD VIDIEITHDL NGLKTRLHEF
LPGEKLGVQT SQGQLLISGQ ASNLQKMNTA VELAQAYADA ASVSKVKSTV LNMMTVGGDH
QVMLEVVIAE VQKEVARQFD SKFFIFNKGD KGFIGTAGAG GTFDLDPAAA IDSRGFFARY
LDGNLMMNFA LDVAKQHGLA KVLAEPNVTA MSGQSAEFLS GGEFPIPVPG TNGSTTIQYR
DFGVGVKFVP SVLDSGQINL NLNVMVSEVS NANSVTLSGG SNTALVVPSI VKRTTATTVE
LADGQTIAIS GLISDTLREN IDKLPGLGDI PILGQLFTSK SFQSGQSELV ILVTPRLVRP
FNKKQISLPT DDFVLPSDME FYLLGKMSHK QSEQEKHETP YEAIESDAKI DDSGTQQKYG
HSL
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