| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2367 |
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| Symbol | |
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| ID | 5611033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2880838 |
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| End bp | 2882094 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933278 |
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| Product | Flp pilus assembly protein ATPase CpaE-like protein |
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| Protein accession | YP_001474104 |
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| Protein GI | 157375504 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4963] Flp pilus assembly protein, ATPase CpaE |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.129539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0992977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAGC CACTGGAGCT GCTAGTGTCT AATGATGAAA ATAAGGAGAC TAGTTCGCCT
GCCAGTACGG TTTCGAATAA TATATTGCCT TATCCGGTAC ATGTGTTACT GATTAACACT
CAAGGCGATA ATGTTAGTGA GATAGAGGTT AGTCTCGAGA CCTGCCTGAA TCTCTCATGG
GAGTCTGTTC ATTCTCTCAA TCCATTTGCA GCCAGATCGT CCACTGCCAG ACCCTTTAAC
CTTATTCTTC TCGTGTTGCC AAACGATGAG CCGAGCGCCG TTCATGCATT GAAAGCAGCC
GCTGCTTATG AGGTCGATAT TATTTTGCTC GGTCATGATA CGCCGCAGAG TGTCCTTCGC
TTAGCCTTCC AACAGGGGGT CAGTGATTTT ATTCCACTCG ATGAACCTGA AGTTGATCTG
CTACCGGCTT TAGAAAAGAT CGCAATAAAA TTGGCTGAAA AAGCCGATTT GGCGCCCGTC
GTAGCAGTGA TGAATGGGAA AGGTGGCTCT GGAGCAAGCT TTATCGCAAC GAGTATGGCC
GTAGTCGCCT CAGCGAGAGA AGAGGGAGAA GTGGCTTTAC TCGATACGGA TCTACTACAA
GGCACATTAG CCCATATGCT GGGGTTAGAA CCTACCTATT TTATTACCGA AGCAATACAA
GAGCTGGAGT CCTTGGATGA AGTAGCTCTT AAAGGAACTA TGACCAACAA AGGACATCTG
CATCTATTAG CTGCTAAACC GTTTGCAGTG TTGAATGCAA CTGAGCATAT CGAACTACGT
AATACCAATG AGCTTCTTTT GAAATGTCGG CAATACTATG ATCAGGTCAT CGTCGATCTC
TCTCGTGGCC CGGAGGTATG GAATGCAGAT ATTCTGACTA ACGCCGATAT TTTATTGGTG
ATACAGCAGA ATGTGATGAG TATTCGAGAA ACAAAGGCAG TCGTTAATCA ATTAATTAAT
TTTATGGGGA TCGATAGTAA CCGAATACAT CTGCTGGTTA ATCGTTATCA AAAGACAAAT
TCAGGGATAA ACCTAAAAGA TATACAAGAG ACAACTGGCA TTAAATCACT ATTTGTCGTG
GCAAATGATT TCAAGCTCGC CAGTCAGTGT ATAGATCTTG GAACGCCCAT AACCGATGTG
GCGAAAAGAG AACAGATGTT GACAGATCTG AATTTGGTAA CTGAGCACTT TTTTCCGAAG
TCGAGTAATG GTGATAAAAA TTCAAAAGGA TTTTGGAACC GACTATTAGG TAAATAA
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| Protein sequence | MDKPLELLVS NDENKETSSP ASTVSNNILP YPVHVLLINT QGDNVSEIEV SLETCLNLSW
ESVHSLNPFA ARSSTARPFN LILLVLPNDE PSAVHALKAA AAYEVDIILL GHDTPQSVLR
LAFQQGVSDF IPLDEPEVDL LPALEKIAIK LAEKADLAPV VAVMNGKGGS GASFIATSMA
VVASAREEGE VALLDTDLLQ GTLAHMLGLE PTYFITEAIQ ELESLDEVAL KGTMTNKGHL
HLLAAKPFAV LNATEHIELR NTNELLLKCR QYYDQVIVDL SRGPEVWNAD ILTNADILLV
IQQNVMSIRE TKAVVNQLIN FMGIDSNRIH LLVNRYQKTN SGINLKDIQE TTGIKSLFVV
ANDFKLASQC IDLGTPITDV AKREQMLTDL NLVTEHFFPK SSNGDKNSKG FWNRLLGK
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