Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2366 |
Symbol | |
ID | 5611032 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2879510 |
End bp | 2880835 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933277 |
Product | putative pilus assembly protein |
Protein accession | YP_001474103 |
Protein GI | 157375503 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.108206 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.102588 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGTCC TGAGTCAACA AGGGATGACA AGCTTTAAAC CGCTTTCAAT AGAAGAGCTA CAGATCAAAG AACAGGTTTA CAACAAACTA TTGAATGTGA TGGATCTTTC TTTGATAGAA ACGATCTCAA AAGAGCAGGC CAGAGGACAA ATTAATGAGA TTTGTGAAAA GCTCATTAGT GAACTGCATC TGCCCATTAA TCTAACTTCC AGACAGCATT TAATTAAACT TATCATAGAT GAAGTCTTAG GTTTAGGCCC TCTGGAGACG CTTCTTGCTG ACCCGACCAT TTCGGATATC TTAGTGAACT CCTTCGATAG GATATATGTG GAGCGTCGAG GGAAACTCGA ACAGGTATCG ATAAAATTTC ACAGCAACGC TCACTTGCTC AATATCATAG ATCGGATTGT ATCGAGTGTC GGACGACGTA TAGATGAATC ATCTCCTATG GTTGATGCTC GTCTTGAAGA TGGTTCGCGT GTGAATGCCA TTATTCCCCC ATTGGCACTC GATGGTCCCG CCTTATCCAT CAGAAGGTTT TCGGTGGACA AACTCAATGC CGAACAGCTC ATCAATATTG GTTCGATAAC ACCGGAGATG AATGAGTTAT TAAAAGCCGC TGTTAAAGGG AAGCTGAATA TTTTGGTCTC CGGAGGTACG GGTAGCGGTA AAACCACGCT GCTGAATATG CTATCCGGGT ATATTCCTAG AGACGAGCGA ATCGTTACCA TCGAAGATTC TGCGGAGTTA CAGCTGCAAC AACCCCATAC CGTTCGACTG GAAACACGCC CTGCAAATAT TGAAGGACGT GGTGAAATCA CCCAAAGAGA TCTGGTGAAG AATTGTTTAC GTATGAGGCC TGACCGGATT GTTATTGGTG AGGTTCGTGG CGGAGAAGCA TTGGATATGC TAACCGCGAT GAACACCGGT CACGAAGGTT CACTAACAAC ATTGCACGCC AATAGCCCGA GAGATGCATT AGGTCGACTG GAGTATATGG TATGTATGGC CGGTTTTGAC ATGCCAGTCA GTAACATAAG AACGCAAATT GCTTCCGCCA TCAATCTGGT TGTTCAACTG GAGCGTCTCG AAGATGGCAC CCGCCGCGTT ACCAGTATCC AGGAGATCAA CGGCATGGAA GGAGAGGTCA TTACTATGTC TGAGATATTT CGTTTTGTTC GTGAGGGGCG AGATCAGAAT GGCGATATTA TCGGTAAATT CAATTCTACT GGCGTGATCC CGGGATTTCA CAACAAGCTT AAACAACATG GTATCGATCT GCCTTTTGAG TTGTTTAACT CTGGTGATCC ATTTGCTGAC TTTTAG
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Protein sequence | MTVLSQQGMT SFKPLSIEEL QIKEQVYNKL LNVMDLSLIE TISKEQARGQ INEICEKLIS ELHLPINLTS RQHLIKLIID EVLGLGPLET LLADPTISDI LVNSFDRIYV ERRGKLEQVS IKFHSNAHLL NIIDRIVSSV GRRIDESSPM VDARLEDGSR VNAIIPPLAL DGPALSIRRF SVDKLNAEQL INIGSITPEM NELLKAAVKG KLNILVSGGT GSGKTTLLNM LSGYIPRDER IVTIEDSAEL QLQQPHTVRL ETRPANIEGR GEITQRDLVK NCLRMRPDRI VIGEVRGGEA LDMLTAMNTG HEGSLTTLHA NSPRDALGRL EYMVCMAGFD MPVSNIRTQI ASAINLVVQL ERLEDGTRRV TSIQEINGME GEVITMSEIF RFVREGRDQN GDIIGKFNST GVIPGFHNKL KQHGIDLPFE LFNSGDPFAD F
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