Gene Ssed_2366 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2366 
Symbol 
ID5611032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2879510 
End bp2880835 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content45% 
IMG OID640933277 
Productputative pilus assembly protein 
Protein accessionYP_001474103 
Protein GI157375503 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.108206 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.102588 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGTCC TGAGTCAACA AGGGATGACA AGCTTTAAAC CGCTTTCAAT AGAAGAGCTA 
CAGATCAAAG AACAGGTTTA CAACAAACTA TTGAATGTGA TGGATCTTTC TTTGATAGAA
ACGATCTCAA AAGAGCAGGC CAGAGGACAA ATTAATGAGA TTTGTGAAAA GCTCATTAGT
GAACTGCATC TGCCCATTAA TCTAACTTCC AGACAGCATT TAATTAAACT TATCATAGAT
GAAGTCTTAG GTTTAGGCCC TCTGGAGACG CTTCTTGCTG ACCCGACCAT TTCGGATATC
TTAGTGAACT CCTTCGATAG GATATATGTG GAGCGTCGAG GGAAACTCGA ACAGGTATCG
ATAAAATTTC ACAGCAACGC TCACTTGCTC AATATCATAG ATCGGATTGT ATCGAGTGTC
GGACGACGTA TAGATGAATC ATCTCCTATG GTTGATGCTC GTCTTGAAGA TGGTTCGCGT
GTGAATGCCA TTATTCCCCC ATTGGCACTC GATGGTCCCG CCTTATCCAT CAGAAGGTTT
TCGGTGGACA AACTCAATGC CGAACAGCTC ATCAATATTG GTTCGATAAC ACCGGAGATG
AATGAGTTAT TAAAAGCCGC TGTTAAAGGG AAGCTGAATA TTTTGGTCTC CGGAGGTACG
GGTAGCGGTA AAACCACGCT GCTGAATATG CTATCCGGGT ATATTCCTAG AGACGAGCGA
ATCGTTACCA TCGAAGATTC TGCGGAGTTA CAGCTGCAAC AACCCCATAC CGTTCGACTG
GAAACACGCC CTGCAAATAT TGAAGGACGT GGTGAAATCA CCCAAAGAGA TCTGGTGAAG
AATTGTTTAC GTATGAGGCC TGACCGGATT GTTATTGGTG AGGTTCGTGG CGGAGAAGCA
TTGGATATGC TAACCGCGAT GAACACCGGT CACGAAGGTT CACTAACAAC ATTGCACGCC
AATAGCCCGA GAGATGCATT AGGTCGACTG GAGTATATGG TATGTATGGC CGGTTTTGAC
ATGCCAGTCA GTAACATAAG AACGCAAATT GCTTCCGCCA TCAATCTGGT TGTTCAACTG
GAGCGTCTCG AAGATGGCAC CCGCCGCGTT ACCAGTATCC AGGAGATCAA CGGCATGGAA
GGAGAGGTCA TTACTATGTC TGAGATATTT CGTTTTGTTC GTGAGGGGCG AGATCAGAAT
GGCGATATTA TCGGTAAATT CAATTCTACT GGCGTGATCC CGGGATTTCA CAACAAGCTT
AAACAACATG GTATCGATCT GCCTTTTGAG TTGTTTAACT CTGGTGATCC ATTTGCTGAC
TTTTAG
 
Protein sequence
MTVLSQQGMT SFKPLSIEEL QIKEQVYNKL LNVMDLSLIE TISKEQARGQ INEICEKLIS 
ELHLPINLTS RQHLIKLIID EVLGLGPLET LLADPTISDI LVNSFDRIYV ERRGKLEQVS
IKFHSNAHLL NIIDRIVSSV GRRIDESSPM VDARLEDGSR VNAIIPPLAL DGPALSIRRF
SVDKLNAEQL INIGSITPEM NELLKAAVKG KLNILVSGGT GSGKTTLLNM LSGYIPRDER
IVTIEDSAEL QLQQPHTVRL ETRPANIEGR GEITQRDLVK NCLRMRPDRI VIGEVRGGEA
LDMLTAMNTG HEGSLTTLHA NSPRDALGRL EYMVCMAGFD MPVSNIRTQI ASAINLVVQL
ERLEDGTRRV TSIQEINGME GEVITMSEIF RFVREGRDQN GDIIGKFNST GVIPGFHNKL
KQHGIDLPFE LFNSGDPFAD F