| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2365 |
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| Symbol | |
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| ID | 5611031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2878521 |
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| End bp | 2879498 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640933276 |
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| Product | Flp pilus assembly protein TadB |
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| Protein accession | YP_001474102 |
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| Protein GI | 157375502 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0315564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0552567 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTTCAA ATGAAATAAT ATTTCTGGGC TTGATTTTTC TGGCTGTGAT CTTGCTGTCA
CAAGCACTAT TTTTACCCGT TTATAGCCCA CAAAGAGCTA ATACGGCCTT AGTGAGAAAG
CGTCTGAAAC AATTGTCTAA AAATTCAGAT GACTCGGAAT TTGAGACCTC TTTACTTAGA
AAAAGTAAGC TGCAAAAGTT GAATCGATTC GGGAGAGCAT TGGAAAAAAT CGAATTCATC
GAAAATTTAA GCTATCGCCT GGAACTTGCT GATTATAAGA TGATGGGCCA TCATTTCTTC
CTGCTTGCTC TAGTCACGTC CATTATAACA GGGCTATTAA CCTGGCAATT TACCCGTGAG
CCCATCATTA CGGTATTCGT AATGGCAGTG ACTCTTATGC TGTTTCATAT CAAACTTTCC
CGGGATACAA ATAAACGTAT GGATGCCATC GAGGCCAGCT TTCCCGATGC CTTAGATGTC
GTTCGAAGAG CACTGCAGGC CGGATACTCC TTCTCCGATG CGATTAAGCT TGCAACAGAG
GAGTTGGAGG GACCCATAGC GAAAGAGTTC AAATTGATGT TTGCTAATAT TAATTATACT
AAAGATGTAA AACGTGCGCT GCTTGGGTTT ATTGAGCGAG TGCCTAGTAT CTCAGCCATG
GCTTTTGCCA GCGCCGTTAT GGTGCAAAAG GAAACGGGCG GAAATCTGGC TGAAAATATT
GAAAGTTTGT CGAGAGTGAT AAGAGAAAGA TTCACTTTCA GACGTAGGGT TAAAACTTTG
TCGGCGGAGG GAAGGCTGTC TGCCTGGATT TTGATTTTGC TGCCTTTTGT TCTGTTTGCT
GTGATTTATC TTCAAACACC CTCCTATGTT GGCGAATTAA CGGGAACTGA AGGTGGGAAA
AAGTTATTGA TGTGGGGGGC TATTGGTATG ACTATCGGTG GCTGGTGGAT TAGCAAAATA
ATCAGAATAG ATATGTAA
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| Protein sequence | MPSNEIIFLG LIFLAVILLS QALFLPVYSP QRANTALVRK RLKQLSKNSD DSEFETSLLR
KSKLQKLNRF GRALEKIEFI ENLSYRLELA DYKMMGHHFF LLALVTSIIT GLLTWQFTRE
PIITVFVMAV TLMLFHIKLS RDTNKRMDAI EASFPDALDV VRRALQAGYS FSDAIKLATE
ELEGPIAKEF KLMFANINYT KDVKRALLGF IERVPSISAM AFASAVMVQK ETGGNLAENI
ESLSRVIRER FTFRRRVKTL SAEGRLSAWI LILLPFVLFA VIYLQTPSYV GELTGTEGGK
KLLMWGAIGM TIGGWWISKI IRIDM
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