| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2364 |
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| Symbol | |
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| ID | 5611455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2877553 |
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| End bp | 2878518 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933275 |
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| Product | putative putative tight adherence TadC-like transmembrane protein |
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| Protein accession | YP_001474101 |
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| Protein GI | 157375501 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00226483 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0303282 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACTATT TAATTGGATT GTTTGGTTCT CTCTTCGATG ACCCTGAACA AATAAAATGG
GCGATATTTG CTGTAGCTGG AATCGCAGGG GTTATGTTTG CATTGTCACT CGCCTTCTTG
ATTAGCGGTA TCTATTCGCC TTTAAGGCAG AGGTTAAAAA GTTTAAACAA AGAAGAGCAG
ATAAAAACCG TACAAACGGA TGTCAATGCC ACGCTTGAGC ATGGTATAGG TAGCATGGTT
GAAAAGTCAC CTCTCAATAT GTCTAATGAC GAGACTCGTA GGTTGCTTAT CCATGCTGGT
TTACATTCAG AAAATGCAAT GGCAATTTTC AGCTCGATAA GAATAATCTT ACTTCTCATC
GGTGCGGGCT CGTCGGTTTT AGTCTTAAGC TTATATCCGG ATTTATCAAC AATGATGAGT
GTGTATATTG TTGCCCTGCT TGTCGGCGGT GCTTTCCTGT TACCCTCTCT GGTGCTACAG
AAAATAGCGA GTAGGCGCAT GAGGATGCTG AGAACGGGTT TTCCTGATGC GTTGGATCTG
TTGGTTGTGT GTTGCGAAGC CGGTTTAGGC TTGATGGCTG CAATGCAGCG TGTGGCCCGG
GAGCTTGCAT TGAGTCATCC AACCTTGGCC AGTGAGCTTG ATCTGGTATG CAGTAAAGTC
AGAGCCGGTT TAACCGTTAA GGTGGCGCTT AATGAGTTTA CCGATCGAAC GGGGTTGGAA
GATATAAAGG GGCTTAACTC TGCTATTTCT CAAAGCATAC GTCTTGGTAC CGGTATTGCG
GAAACATTAC GCGTATTTTC AGATGAGTAC CGAAATAAGC GACTTCAGGA AGCCGAGGAG
CAAGCGGCAA AATTGGCAGT AAAAATGATC TTTCCTATGA TGTTATGTAT CTGGCCTTCG
TTTTTCATTG TTGCCATTGG GCCGGCGGTG CTCAAGGTGA TGAAAGTATG GGGCCAGGCA
TTTTAG
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| Protein sequence | MDYLIGLFGS LFDDPEQIKW AIFAVAGIAG VMFALSLAFL ISGIYSPLRQ RLKSLNKEEQ
IKTVQTDVNA TLEHGIGSMV EKSPLNMSND ETRRLLIHAG LHSENAMAIF SSIRIILLLI
GAGSSVLVLS LYPDLSTMMS VYIVALLVGG AFLLPSLVLQ KIASRRMRML RTGFPDALDL
LVVCCEAGLG LMAAMQRVAR ELALSHPTLA SELDLVCSKV RAGLTVKVAL NEFTDRTGLE
DIKGLNSAIS QSIRLGTGIA ETLRVFSDEY RNKRLQEAEE QAAKLAVKMI FPMMLCIWPS
FFIVAIGPAV LKVMKVWGQA F
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