| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2363 |
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| Symbol | |
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| ID | 5611454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2876475 |
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| End bp | 2877509 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933274 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474100 |
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| Protein GI | 157375500 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000181348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.018049 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGGTT TGAATCGATT TATCAGTAGT AAGAGATATG CAGTTACAGT GTTGATAGCA
CTATCACTCC AACTACTTGT GGCCTGCAGT GCGACAAAAA CAGATGAGGA GTTGCTCAAT
TTAGAGGTGA CACCACCGAC TCGGCAAGAT CTTTATGATG GCAGCTCTAT GGGGTCTGTT
ACTGCGGCAA ATCCTCCCAA AGATGAGGCC GATGCTTTAG TGCGTGCAAA AAAAGAGGAG
GAGAAGGGGA ATCTGGATCA GGCATTATAC CTCTATGTAC AGGCGCTCGA TTTTAAAGCT
GACAACGCAC TGACTCTATA TAATATTGCA AGAATTCACA GCATCAAGGG TAACATTCAA
CTTGCCTATC TCACCTATAA CGAATCCTTG ACCATAGATC CTGAGATGCT TATGTCTCAT
GCTGGGCTTG GCTTGATTAA CATGGATAAA CGTCAGCATG AACAGGCAAA AATTCATCTG
GAAAAAGCGG TGAGTTTAGA CCAATCCAGA CTCACTGTTA CCGGTAAAGA GGTTACAGAG
GAGGGGATGT ACCTTCTGGA CCTACAATCT CCGATACGAA TTTATAATGC GCTGGCTATT
CTCTATGACC TGGAAAATCG GCACGAAGAA GCCCGTCATT ACTATTTACT GGCATTGCGC
AAAGAACCTC ACTCTGCTTT GATTATCACC AATCTGGGAT ACTCACACTA TCTCGGTGGA
AATATAGCCC TTGCGGAAAA ATACCTTAAG AAGGCGATTA AGGAAGATCC AAATTTTGAA
CGTGGCTGGA CAAATCTAGG GCTTGTTTAT GTCAGAAAGG GCTTGTATGC CAGAGCATTA
TCGACGTTCG AGCATACCAT GGAGCCCGCC GATGCCTTGA ATGATCTGGG GTATTTCCTC
ATGTTAGAAG GGGAGTATGA ACAGGCCGTT GAATTGTTTC AGAGAGCCAT TGATAGCTCT
CCCAGCTACT TTGAGCAGGC TCAAAAGAAT CTAAAAAGAG CATCGATGGA ATTAGATACG
CAAAGAAGGA ATTAG
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| Protein sequence | MKGLNRFISS KRYAVTVLIA LSLQLLVACS ATKTDEELLN LEVTPPTRQD LYDGSSMGSV
TAANPPKDEA DALVRAKKEE EKGNLDQALY LYVQALDFKA DNALTLYNIA RIHSIKGNIQ
LAYLTYNESL TIDPEMLMSH AGLGLINMDK RQHEQAKIHL EKAVSLDQSR LTVTGKEVTE
EGMYLLDLQS PIRIYNALAI LYDLENRHEE ARHYYLLALR KEPHSALIIT NLGYSHYLGG
NIALAEKYLK KAIKEDPNFE RGWTNLGLVY VRKGLYARAL STFEHTMEPA DALNDLGYFL
MLEGEYEQAV ELFQRAIDSS PSYFEQAQKN LKRASMELDT QRRN
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