| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2354 |
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| Symbol | |
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| ID | 5610613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2865282 |
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| End bp | 2865956 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933265 |
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| Product | nucleotidase |
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| Protein accession | YP_001474091 |
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| Protein GI | 157375491 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00177475 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000000845361 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATATG ATTGGATCCT CTTCGACGCC GATGAAACCT TGTTTCATTT CGATGCTTTC
GAAGGCCTGA AATTGATGTT TAGCCGTTTT GGCGTGAGTT TTACCCGTGT CGATTTTGAT
GCCTATCAAC TCATCAACCA GCCACTCTGG GTCGATTACC AGAATGGTGT CATCTCAGCG
GCAGAGCTTC AGCAACAAAG GTTTACCCAC TGGGCTGAAA AGTTAAGTGT GACCGCAAGT
CACCTTAACA GTGCCTTCTT ATCGGCAATG GCCGAAATTT GCGCTCTGCT GCCAGGCGCG
AAAGAGTTAA TCGAAAAATT AAGTGGTAAG GCAAACCTTG GCATCATCAC TAACGGCTTT
ACTGAGCTGC AGACGGTCAG GTTAGAAAAG ACCGGTTTGC TCGGTGCATT CGAGCATGTC
GTGATATCTG AGCAAGTTGG AATAGCTAAA CCCGATGTCG GTATCTTCGA ACATGCATTG
AAACGTATGG AAAACCCCGA CAGAGAGAAA GTCTTAATGG TGGGTGATAA TCCTCATTCC
GATATTCAAG GTGGAATTAA TGCCGGATTG CATACCTGTT GGCTGAACAC CCATAATGCA
CCGAGACCAG AGGGGATAGA GCCACACTTT GAAGTGAGCT CGCTGCATGA GTTACAGCGG
ATCTTAGTGG CTTAA
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| Protein sequence | MKYDWILFDA DETLFHFDAF EGLKLMFSRF GVSFTRVDFD AYQLINQPLW VDYQNGVISA
AELQQQRFTH WAEKLSVTAS HLNSAFLSAM AEICALLPGA KELIEKLSGK ANLGIITNGF
TELQTVRLEK TGLLGAFEHV VISEQVGIAK PDVGIFEHAL KRMENPDREK VLMVGDNPHS
DIQGGINAGL HTCWLNTHNA PRPEGIEPHF EVSSLHELQR ILVA
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