Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2352 |
Symbol | |
ID | 5611364 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2862534 |
End bp | 2863478 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640933263 |
Product | transcriptional regulator, LysR family protein |
Protein accession | YP_001474089 |
Protein GI | 157375489 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000117377 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00000015924 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAATATAT CTCGTATTGA CCTGAATTTA TTGGTTTATT TTGATGTTTT ACTTCGTGAA CTAAATGTTA CTCGGGCCGC AGATCAGCTG GGTATCAGCC AACCAGCGAT GAGTAACGGC CTGAAAAGAT TGCGTGTTCT ATTTGATGAT CCCCTGTTAA TCAGAACCAG CAAAGGTATG ACCCCGACTG AGCGGGCATC GGAGCTAAAA CCTGAGATCC GCGAGTTGCT GGTGGGCCTG GAGAAGGCGG TACAACCCAA AGCCAAGTTC AACCCTTATG AAAGTGAGAA GGTGTTCAGA ATGATGGCCT CCGATTACGC CGAAGCCACC CTGATCCCAC TTCTTATAGC CAGATTACGT AATGAAGCGC CGAAGGTGAT CCTTGATATC ATGACACCCA GCGATGTTAA CTTTCCAGAT GTTGAGCAAG GAAGAGTCGA TATGGTGATC AACCGTTTCG ACAGTATCCC GCAATCTTTT CACCAAAAAG TACTGTGGAA AGACACATTC AGCTGTTTAA TCAACAAAAA ACATCCGGTA CTGAAAAACT TTAATCTTGA AAGCTATCTG GATGCGCATC ATGTTTGGGT AAGTAAAACC GGGATGGGGG TTGGTGTTGG TATGGATCCC GATGATGTTC AGCGCTTAGG TTGGGTCGAT GAAGCACTGG CTAGATTAAA TGCTAAACGC AGGATCACCG TATTTACCCG ACATTATCAA GCGGCGAGTT CATTGGCTGA ACGTCAAGAC CTGATAGCGA CAGTCCCCAG TAAGATGGCG AGACTACAAC AAGATAATAG TAGGGTAAGT ATCGTTCCTC CACCTTTCGA TATACCTCCT ATAGAGTTGA CAATGGCATG GAGTCCGCTG TTGCAGCACA ACCCTGCTCA CAGGTGGATG CGAGAGCTTA TCACCGAAAC CGCACGCATC ATCGATAGGT TCTGA
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Protein sequence | MNISRIDLNL LVYFDVLLRE LNVTRAADQL GISQPAMSNG LKRLRVLFDD PLLIRTSKGM TPTERASELK PEIRELLVGL EKAVQPKAKF NPYESEKVFR MMASDYAEAT LIPLLIARLR NEAPKVILDI MTPSDVNFPD VEQGRVDMVI NRFDSIPQSF HQKVLWKDTF SCLINKKHPV LKNFNLESYL DAHHVWVSKT GMGVGVGMDP DDVQRLGWVD EALARLNAKR RITVFTRHYQ AASSLAERQD LIATVPSKMA RLQQDNSRVS IVPPPFDIPP IELTMAWSPL LQHNPAHRWM RELITETARI IDRF
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