| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2351 |
|---|
| Symbol | |
|---|
| ID | 5611363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2860134 |
|---|
| End bp | 2862308 |
|---|
| Gene Length | 2175 bp |
|---|
| Protein Length | 724 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933262 |
|---|
| Product | malate synthase G |
|---|
| Protein accession | YP_001474088 |
|---|
| Protein GI | 157375488 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2225] Malate synthase |
|---|
| TIGRFAM ID | [TIGR01345] malate synthase G |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000773408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000281065 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAC GAATTCAAGT TGGCAATCTG CAAGTGGCAA CTATGCTCTA TGAATTGATC
AATGAGCAGA TCATTCCGGG GACAGGGATC GACTCAGATA GATTCTGGAC TAAGTTTGAA
GCCTTAATCG ATGACCTCGG ACCCAAGAAC CGAGCACTTC TAGAAAAACG TGATGAATTA
CAGCAGCAAA TCGATCAGTG GCACTTAACC CATAAGCAGC ATGAACCTGA CGCCTATAAG
GCGTTCTTGA CCAAGATTGG TTATCTTGTT CCTGAAGGTG AAGATTTTTT GGTGTCGACG
GCAAATGTGG ATATCGAAAT AGCAGAGCAA GCCGGTCCTC AGTTAGTGGT GCCGGTTAAA
AATGCACGAT TTGCCTTAAA TGCTGCTAAT GCCCGATGGG GCAGCTTATA TGATGCCTTG
TATGGTACCG ATGCTATTAG CTTCGATGGC GGCGCAGAAA TAACTGCACA CTTTAATCCT
GTTCGCGGTG CAAAAGTTGT CGCGTTCGCT AAACAACACT TAGATACACT GGCCCCGTTA
GCCGTTGGGA GTCATAGTGA AGTCGTTCAT TATCAGGTCG ATGGGGCAAG CCTGTTGGTT
ACGCTATCAG ACGGTTGCGA TACTCGCTTA CGGGAGCCGG AAAAGTTTAT TGGCTATCAA
GGAGATGAGA AGTCACCAAC AGCGATTTTA TTGAAAAATA ACGGCCTACA TGTAGAGATA
CAGATAGATG GCGAACATCC TATCGGTAAG ACCGATAAAG CCAATGTCAA AGATCTACTC
GTCGAAGCCG CCGTCACCAC CATTATGGAT TGTGAAGACT CCGTCGCTGC CGTCGATGCC
GAAGATAAGT GTGAAATATA CCGTAATTGG CTTGGTCTTA TGCAAGGCAC TCTGTCTGCA
GAGGTGAAAA AAAGTGGTAA GAGCTTCACC CGTGAGTTAA ACGAGGATCG CCAGTATAAA
GACACCGAGG GGAGAAACCT GACTCTACCG GGCAGAAGTC TGTTGTTTAT TCGTAATGTT
GGTCATTTGA TGACAAATAA TGCGATTTTA GACAAAGAGG GTAACGAGAT CCCGGAAGGG
ATCTTAGACG GCATGGTGAC TGTGCTCGCC GCTATGCATG ATCTAAAAGG CAACAATAAC
AAGCGATCGA ATAGCCGTGC GGGATCCGTT AATATCGTTA AGCCCAAGAT GCACGGTCCC
GAAGAGGTCG AGTTTACCTG CGAGCTGTTC ACTAGAATTG AAGATGCGCT CAAGTTATCC
CGTGACACCA TTAAGTTGGG CATTATGGAT GAGGAACGCA GAACCACAGT CAACCTCAAG
GAGTGTATTA GGGTCGCACA AGATAGGGTC GTGTTTATCA ATACCGGTTT TCTGGACCGC
ACCGGAGATG AAATACATAC TTCGATGCTT GCCGGGCCTT TCGTTCCCAA GACTCAGATG
AAACAGCAAG CCTGGATTAA TGCCTATGAA GATTGGAATG TCGATATTGG TTTGGCCTGT
GGGCTACCTG GAAAAGCGCA GATAGGAAAG GGAATGTGGG CGATGCCCGA TGAGATGGCA
GCTATGTTAG CTCAGAAAGG TGCTCATCCA ACCGCCGGAG CGAATACGGC ATGGGTACCG
TCGCCCAATG GAGCAACCTT ACACTCTTTG CACTACCATC AGATCAATGT ACAGGATCGA
CAACAGCTAC TTTGTGAACG AGAGCGGGCG AGTCTGGAGG ATATATTGAC GATTCCACTG
CTTGAAAATC CGGCAGAACT GACTCATGAA CAGATCCAAC GTGAACTCGA CAATAACGCT
CAGGGAATTT TAGGCTATGT GGTGCGCTGG ATCGATCAAG GGGTGGGCTG CTCGAAAGTA
CCGGATATTA ACGATGTCGG TTTGATGGAA GACAGGGCAA CGTTAAGGAT CTCATCTCAA
CATATCGCCA ACTGGCTCGA ACATGGTATC TGTACTGAAG AGCAGGTGAT CGCTTCAATG
CATAAGATGG CGAAAGTTGT CGATAAACAA AATGAAGCCG ATAGGCAGTA TATTAATATG
GCACCTGAAT TTGACGGTAT CGCTTTTAAA GCAGCTTGTG ATCTGATTTT TAAAGGAAAA
GATCAACCAT CAGGATATAC AGAGCCTCTA TTGCATGCCT ATCGCATCGA GGCAAAGTCT
CGTCAGCAGG CGTAA
|
|---|
| Protein sequence | MTSRIQVGNL QVATMLYELI NEQIIPGTGI DSDRFWTKFE ALIDDLGPKN RALLEKRDEL
QQQIDQWHLT HKQHEPDAYK AFLTKIGYLV PEGEDFLVST ANVDIEIAEQ AGPQLVVPVK
NARFALNAAN ARWGSLYDAL YGTDAISFDG GAEITAHFNP VRGAKVVAFA KQHLDTLAPL
AVGSHSEVVH YQVDGASLLV TLSDGCDTRL REPEKFIGYQ GDEKSPTAIL LKNNGLHVEI
QIDGEHPIGK TDKANVKDLL VEAAVTTIMD CEDSVAAVDA EDKCEIYRNW LGLMQGTLSA
EVKKSGKSFT RELNEDRQYK DTEGRNLTLP GRSLLFIRNV GHLMTNNAIL DKEGNEIPEG
ILDGMVTVLA AMHDLKGNNN KRSNSRAGSV NIVKPKMHGP EEVEFTCELF TRIEDALKLS
RDTIKLGIMD EERRTTVNLK ECIRVAQDRV VFINTGFLDR TGDEIHTSML AGPFVPKTQM
KQQAWINAYE DWNVDIGLAC GLPGKAQIGK GMWAMPDEMA AMLAQKGAHP TAGANTAWVP
SPNGATLHSL HYHQINVQDR QQLLCERERA SLEDILTIPL LENPAELTHE QIQRELDNNA
QGILGYVVRW IDQGVGCSKV PDINDVGLME DRATLRISSQ HIANWLEHGI CTEEQVIASM
HKMAKVVDKQ NEADRQYINM APEFDGIAFK AACDLIFKGK DQPSGYTEPL LHAYRIEAKS
RQQA
|
|---|
| |