| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2339 |
|---|
| Symbol | |
|---|
| ID | 5614071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2836460 |
|---|
| End bp | 2837020 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640933250 |
|---|
| Product | elongation factor P |
|---|
| Protein accession | YP_001474076 |
|---|
| Protein GI | 157375476 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0231] Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) |
|---|
| TIGRFAM ID | [TIGR00038] translation elongation factor P |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0127708 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000774708 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACTG CTCATGAAAT CCGTCCTGGT AACGTGATCA TGTTAAATGG CAGCCCATGG
GTTGTTCAGA AAACTGAAAC GACTCGTTCT GGCCGTAACG CCGCCATCGT TAAGATGAAG
TTAAAGAACG TACTGCTTGA TTCAACGACT GAAACCACCT TTAAAGGTGA AGATAAGATG
GAAGATATCA TCTTAGAACG TCTTGACTGT ACTTATTCAT ACTTTGCCGA TCCTATGTAC
GTCTTTATGG ACGCTGAATA CAATCAGTAC GACGTAGAAT CTGGAAACTT AGGTGATGCT
GCGGCTTACA TCACTGATGG TATGGAAGAG ATTTGCCAGG TAACCTTCTA CGAAGGTAAA
GCTATCTCAG TTGAACTACC GACGACTATC GTACGCGAAG TGACTTACAC TGAGCCTTCT
GCACGTGGCG ATACTTCAGG TAAAGTAATG AAGCCAGCAA CTATCGCTGG TGGCGCAACA
CTCAGCGTTG CAGACTTCAT AAAGACTGGC GAAATGATTG AAATTGATCC TCGCACAGGT
GAGTTCAAGA AGCGTGCCTA A
|
|---|
| Protein sequence | MKTAHEIRPG NVIMLNGSPW VVQKTETTRS GRNAAIVKMK LKNVLLDSTT ETTFKGEDKM
EDIILERLDC TYSYFADPMY VFMDAEYNQY DVESGNLGDA AAYITDGMEE ICQVTFYEGK
AISVELPTTI VREVTYTEPS ARGDTSGKVM KPATIAGGAT LSVADFIKTG EMIEIDPRTG
EFKKRA
|
|---|
| |