Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2338 |
Symbol | |
ID | 5613854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2835236 |
End bp | 2836414 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640933249 |
Product | hypothetical protein |
Protein accession | YP_001474075 |
Protein GI | 157375475 |
COG category | [S] Function unknown |
COG ID | [COG4394] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000322197 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000102479 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTACTG AAATAGCTAA TCAACACTGG GATATCTTCT GCGAAGTCGT GGATAATTAC GGCGACATAG GCGTAACATG GCGTTTAGCA AAGCAGCTCG TCAAAGAATA CCAGATTGAT ATCAATCTCT GGGTCGATGA TTTAAAGAGT TTCTCGCATA TTTTACCGGG ACTAAAACCA GATCAGGCAA CACAAACGTT TGACCATGTC ACCATACATC AATGGAATGT TCCGTTAGAC ATTAACTTTG TACCGGGGGC CGTTCTGATT GAAGCCTTCG CCTGTGAGCT GCCTGAGCAA GTTAAATCTC AGTTAATAGC ACTGCAACAA AGTCCCGATG ACACTCCCCC GCTTTGGCTA AACCTGGAAT ACCTAAGTGC CGAAAATTGG GTAGAAGGGT GTCATGGTCT ACCCTCGATG CAAGCAAGCG GTATAAAGAA GTACTTTTAC TTTCCTGGCT TTACCCCAAA AACAGGGGGA CTCATTTGCG AAAACGAGTT GCTTGAGCAG CGTACTGCGT GGCAGTCGGA CCCCGCTAAT AAGCTGGCAC TGTTTTCACA GTTAGGCCTG AGCGGCATTG ATGTGCAAGA TAAAGTGATC AGTGTTTTCA GCTATGAAAC GCTGGCATTA TCGGCACTGT GTCAACAGTG GCAAGAGTCT AGTCAAAAGA TACATGCTTT GATCCCCAAA GGTCGTAGCT TAAATAGTCT GACTCATTTG CTCCCTTGCT CCGTTGAAGC GTTGACCCCG GGGCAACAGA TTGTTATCAA CAATTTGACC CTTCACATTC TGCCAATGAC AGATCAACCG AGCTTCGATC GCCTACTCTG GAGTTGTGAC TTTAATATCG TGCGAGGCGA AGATTCATTT TTGAGGGCTC AATGGGCGGC TAAACCCTTT ATCTGGCACA TTTATCCTCA AGAAGATGAC TATCACCTGG TAAAATTAGA AGCTTTTATT AGTCTTTACT GCGATAATCT TGCACCTGAA ATTGCCAAGT ATTGGACCGA ATTGAATCTT GCATTCAACC AAGAACAGCA ATCTGCCGTG AATCTTCACT GGCAAAACCT TGATTCTGTT AATTTGCCTT TGTTGCAACA CGCACAAAAA TGGCCAATTT TCGCATTAAA TGATGCAGAT CTTGCTACTC GACTGGTTCA ATTCGTCAAA AATAGCTAA
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Protein sequence | MSTEIANQHW DIFCEVVDNY GDIGVTWRLA KQLVKEYQID INLWVDDLKS FSHILPGLKP DQATQTFDHV TIHQWNVPLD INFVPGAVLI EAFACELPEQ VKSQLIALQQ SPDDTPPLWL NLEYLSAENW VEGCHGLPSM QASGIKKYFY FPGFTPKTGG LICENELLEQ RTAWQSDPAN KLALFSQLGL SGIDVQDKVI SVFSYETLAL SALCQQWQES SQKIHALIPK GRSLNSLTHL LPCSVEALTP GQQIVINNLT LHILPMTDQP SFDRLLWSCD FNIVRGEDSF LRAQWAAKPF IWHIYPQEDD YHLVKLEAFI SLYCDNLAPE IAKYWTELNL AFNQEQQSAV NLHWQNLDSV NLPLLQHAQK WPIFALNDAD LATRLVQFVK NS
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