Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2333 |
Symbol | |
ID | 5614132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2832381 |
End bp | 2832923 |
Gene Length | 543 bp |
Protein Length | 180 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933244 |
Product | replication initiation regulator SeqA |
Protein accession | YP_001474070 |
Protein GI | 157375470 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3057] Negative regulator of replication initiationR |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0410571 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000239725 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATATA TCGAGGTTGA TGAAGAGTTA TATCGCCATA TAGCCGGAAA AACTGAGCGT ATCGGTGAGA GTGCTTCAGA TATCCTACGT CGTTTACTGG GCCTGAATGT CGAAGCGGTG AACCATGATA CCCCGCAGAC AATCAGTCAC CCGGGTATGG AACAAACCGA CAACGTTGTC GCGCCCGTTG AAAACAGAGA GATTGCCAAA GATCTCACCG AAAGTATCAA TAAAGAGGAA CTTGCAGCCC AAAAGGGCGC TGTTGGACGT TTTCTGTTTA TCCTCGAGGC GGTTTACCGT GCGGCGCCGG AACAATTTTC TCAGGTCTTA CAAATTCAAG GCAGAGACAG GCTATATTTT GCGACATCTA AGGCTTCATT GCTAAAGGCC AGTAAATCTG CAAACCCTAA AGAGATTGGC CAAAGTGGGT TTTGGGTCAC GACCAATAAT AATACCGCTA AGAAGCGTAC TATTTTGACT GAGGTACTTC ATCAATATGG TACTGTCGAA GCGCAAATAG AAGCCATAAC AAATAACATT TAG
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Protein sequence | MKYIEVDEEL YRHIAGKTER IGESASDILR RLLGLNVEAV NHDTPQTISH PGMEQTDNVV APVENREIAK DLTESINKEE LAAQKGAVGR FLFILEAVYR AAPEQFSQVL QIQGRDRLYF ATSKASLLKA SKSANPKEIG QSGFWVTTNN NTAKKRTILT EVLHQYGTVE AQIEAITNNI
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