| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2329 |
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| Symbol | |
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| ID | 5611258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2827080 |
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| End bp | 2828258 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933240 |
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| Product | 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) |
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| Protein accession | YP_001474066 |
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| Protein GI | 157375466 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00307415 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCAACG CAACAAGCCA TAATGAAACT GTCCATCGCG TCAGTTTTCT CGATAAGGAC
TCTGTGTCAG TCCCTATTTT AAAGATATTG CAAGCGGACG GTACAGTGTA TGAAAATGCT
GTTCTGCCCA CGATAGGTCA AGAACTGGCA ACAAAAATTC ACGATACTTG TGTTTTTACA
CGAGTGTTGG ATGAACGTAT GTTAGGCGCT CAACGTCAGG GTCGTATCAG TTTTTATATG
ACCTGTACCG GTGAGGAAGC CTCAATCATA GGCAGTGTGG CATCGCTAGA TAGCGATGAT
GTCATCTTAG CCCAGTACCG TGAGCATGCT GCGATACGTT ACCGTGGTTT TTCTACTGAG
CAGTTTATGA ATCAGCTGTT CAGTAATGAG AAAGATCTGG GTAAGGGACG GCAGATGCCG
ATCCATTATG GCTCTGCCGA GCTTAACTAT CAGACTATCT CCTCTCCACT GGCTACCCAA
ATACCTCAGG CATCCGGCGT GGGGTACAGC TTGAAGATGC AAGATAAGCG TAATGTCGCC
GTTTGTTACT TCGGTGAAGG CGCCGCTTCG GAAGGCGACT TTCATGCGGG ATTAAATATG
GCGGCAGTAC TTAAGTCACC GACCATCTTT TTCTGCCGCA ATAATGGTTA TGCCATCTCA
ACGCCAACCA GCGAGCAGTT TATGGGCAAC GGTATTGCCA GTCGCGGTCC GGGGTACGGC
ATACACACCA TACGCGTAGA TGGTAATGAC ATGCTGGCGG TTTTAGCGGC GACACAACAG
GCGCGTGCTC ATGCTATCCA CAATAAAGAA CCTGTTCTGA TCGAGGCGAT GACCTATCGA
CTCGGTGCTC ATTCGTCCTC AGATGATCCA TCGGGTTATC GTTCTAAAGA GGAAGAGGCC
AAATGGCAGA CACATGATCC GGTTAAACGT TTCAAATTAT GGATGATTAA CAAGGGCTGG
CTGACTGAAA AACAAGATGC AGACCTGTAT GAGAAATACC GTAAAGAGGT ACTTGCCGAA
TTAAAACTTG CAGAAAAACG TCCGATGTCG ATGCTCGATA CCATAGTTGA GGACGTTTAT
GATGCGCCAA CGCCTAGGTT ACAACAGCAG TTGAAATCCC TTAAGAAGCA TCTGAACAAG
TACCCTGATT CATATCCTAA AAGTGTAGGG AGAGGTTAA
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| Protein sequence | MSNATSHNET VHRVSFLDKD SVSVPILKIL QADGTVYENA VLPTIGQELA TKIHDTCVFT
RVLDERMLGA QRQGRISFYM TCTGEEASII GSVASLDSDD VILAQYREHA AIRYRGFSTE
QFMNQLFSNE KDLGKGRQMP IHYGSAELNY QTISSPLATQ IPQASGVGYS LKMQDKRNVA
VCYFGEGAAS EGDFHAGLNM AAVLKSPTIF FCRNNGYAIS TPTSEQFMGN GIASRGPGYG
IHTIRVDGND MLAVLAATQQ ARAHAIHNKE PVLIEAMTYR LGAHSSSDDP SGYRSKEEEA
KWQTHDPVKR FKLWMINKGW LTEKQDADLY EKYRKEVLAE LKLAEKRPMS MLDTIVEDVY
DAPTPRLQQQ LKSLKKHLNK YPDSYPKSVG RG
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