| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2321 |
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| Symbol | |
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| ID | 5609670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2815228 |
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| End bp | 2817111 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933232 |
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| Product | nucleotidyltransferase |
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| Protein accession | YP_001474058 |
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| Protein GI | 157375458 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.477711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00895935 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAGTCG AGCTACTTGA AATTCGAAAT TTCATCCGCC AATATCCCCC TTTTGATCAA
CTGCCTGAAG ATGCATTAAT CGAAGTTTCA AAAAGTGTCG AGATCTCATA CTACCGAGCT
GACAGTATGA TCATTGAATT TGCTGATAAA ATTCACGATC TCTTTATGGT CCGCAGTGGT
GTGGTCGAGA TATATCGCCG TACTGGTGAG CTTTATAACC GTCTTGACCA AGGTGGCTTA
TTTGGGCAGA TGGGGCTATT AACTAATAAT AAAGTTCGTT TCCCAGCCAA ATCAATTAAA
GACACTCTTT TATACTGCAT TCCACAGAAT ATTTTTGAAG AGTTCTGCGA ACGCTATGAG
ACCTTTGCCG ACTTTGTTGA AGTAGAAGGC AGTATTCGAT TACAGCAAGC AGTTGAAGAT
AATAGTGATG ATGCCAACTC ACTGACCACC TCAAAGGTAA AGACCTTACT CAGTGGCGAG
CCTGTGATGC TACCTATCAC CACCACAATT CAGAACGTGG CCAAAATCAT GTCTGAAGAG
AATGTCTCTG CTGCAATTAT CAATGATCCA ACCCTCGCCG ATGAAGGTGG CAACAGCTTT
GTTGGCATTA TTACTGAGCG CGATCTGTGC GCAAAAGTTA TCGCGCAAGG GCTAGATGTC
GATACCCAAG TGGTCGAGGT GATGTCAACA GAGCTGATCT CTTTGGATCA CAACGCCTAC
ATTTTTGAAG CGATGCTGTT AATGCTTCGC TATAACGTTC ATCACCTCCC TATTCTAAAA
AACAAACAAC CGATAGGCTT AATTGAAGTC AGCGACATCA TTCGTTATGA ATCACAAAAT
AGTTTGTTAT TTGTCAGCAG TATTTTCCAG CAAAATAGCA TTGAAGATTT GATTATGCTG
TCGAATCAAC TCAAAGACTG TTTTGTCCGC ATGATAAACG AAGATGCCAA CTCGCACATG
GTCGGTCGGG CGATGTCTGA AATCGGCAGA AGTTTTAAAC AACGTCTGCT TGAATTGGCT
GAAGAAAAAT TAGGGCCACC GCCGGTGCCG TACTGCTTCT TAGCGCTTGG ATCAATGGCT
CGCGATGAAC AGCTTATCGT GACCGACCAA GACAATGCGA TCATTCTCGA TAACGAATAT
CAAGAGTCAC TCCATGGGGA TTACTTTAAA GCGCTTGCCA CCTATGTGTG TGATGGTTTA
GCCGCTTGCG GTTACACCTA TTGTACGGGC GACATCATGG CAACTAATCC TGAGTATCGA
AAAACACAAT CTCAATGGGA AGCGTGTTTT GCTGATTGGA TTGAGAATCC AAACCCGCAA
GCTTTGCTTA ATAGCTCAAT ATTTTTCGAT CTCAACGGTG TGTACGGCAG ACCCAAATGG
GCTGAACAGT TGAACGCGTT TATCCTTAGA AAGGCGAAAA AGAACAACCG CTTCTTGGCC
TGTCTTGCCA GAAATGCATT AAACCGCACA CCACCACTTG GCTTCTTTAA AGACTTTGTG
ATGGAAAAAG ATGGCCGCCA TAACAACTCC ATTAATTTAA AGAGAAGAGG TACGGCACCT
TTAGCGGACC TCATCCGTGT GCACGCCCTT GCTATCGGCT CCCAATCCCA GAACTCATTT
GATCGATTAG AAGACATCAT CGAAGCGGGG ATTTTACCTC CATCAAAAGG TAAAGATCTG
CAACATGCGA TGGAATTCAT CTCTTTGGTT CGCATTCGTC ATCAAGCATT AGACATAGAG
TCAGAGCAAG AGCCAGATAA TAATATTGAG CCAGAAAACA TGTCAGATTT TGAAAGGCGA
AATTTGAAGG ATGCCTTTTT GGTCTTAAGC AGTGCGCAAA ACTTTTTAAA ATTCCGCTAC
AGTGCCAACA GCATGCAGGG ATAA
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| Protein sequence | MEVELLEIRN FIRQYPPFDQ LPEDALIEVS KSVEISYYRA DSMIIEFADK IHDLFMVRSG
VVEIYRRTGE LYNRLDQGGL FGQMGLLTNN KVRFPAKSIK DTLLYCIPQN IFEEFCERYE
TFADFVEVEG SIRLQQAVED NSDDANSLTT SKVKTLLSGE PVMLPITTTI QNVAKIMSEE
NVSAAIINDP TLADEGGNSF VGIITERDLC AKVIAQGLDV DTQVVEVMST ELISLDHNAY
IFEAMLLMLR YNVHHLPILK NKQPIGLIEV SDIIRYESQN SLLFVSSIFQ QNSIEDLIML
SNQLKDCFVR MINEDANSHM VGRAMSEIGR SFKQRLLELA EEKLGPPPVP YCFLALGSMA
RDEQLIVTDQ DNAIILDNEY QESLHGDYFK ALATYVCDGL AACGYTYCTG DIMATNPEYR
KTQSQWEACF ADWIENPNPQ ALLNSSIFFD LNGVYGRPKW AEQLNAFILR KAKKNNRFLA
CLARNALNRT PPLGFFKDFV MEKDGRHNNS INLKRRGTAP LADLIRVHAL AIGSQSQNSF
DRLEDIIEAG ILPPSKGKDL QHAMEFISLV RIRHQALDIE SEQEPDNNIE PENMSDFERR
NLKDAFLVLS SAQNFLKFRY SANSMQG
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