| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2318 |
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| Symbol | |
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| ID | 5610964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2809881 |
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| End bp | 2811827 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933228 |
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| Product | 23S rRNA (Gm2251)-methyltransferase |
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| Protein accession | YP_001474055 |
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| Protein GI | 157375455 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0019664 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00147511 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTCAAT CTCCCCATGC ATTATTACAG GCTCACTTTG GATTTTCAGA TTTCAGGAGT
GGTCAATATG ATGTGATTAA CCATGTTCTT CAAGGGCATA GCGCCGCGGC TATATTTCCT
ACTGGCTCGG GTAAGTCATT GTGTTATCAG TTGCCGGCAA TTGCGCTACC CAACCTTACC
TTAGTGGTTT CGCCACTATT AGCCTTGATT CAGGACCAGT TGTCATTCCT GCAGTCGAAG
GGAATTAACG CTGCCAGTAT CGACTCCAGT CAGAGTCGGG AGCAAACCCT GGACGTCATG
CGCGGGGTGA GACAGGGAGA AGTAAAGATA TTGATGATCT CTGTTGAGAG ACTCAACAAT
GAGCGTTTCA GGCAGTTTAT CAGTGAGGTG CCGGTTTCAA TGTTAGTGGT CGATGAGGCT
CACTGTATCT CCGAGTGGGG CCACAATTTT CGCCCTGATT ACCTTAAGCT GCCACGATAC
AGGAAAGAGT TGAATATCCC TCAAACTCTA CTGCTGACTG CCACAGCGAC ACCTAAGGTG
ATAGAGGATA TGGGCAGTAA ATTTGGCATA GCCCCTGAAA AAGTCACCTT AACCGGGTTT
TATCGGCCCA ACCTTCACTT AAATGTTAAG GGGGTCGCTA GCAGGGATAA AGTTGACGAG
TTGGCGTTAT GGCTTAGCTC CAGAGTCCAT CAATCCGGCA TCATCTACGT CACCCTGCAA
CAAACCGCAG AATTTGTGGC CGAGAAACTT AGCCAGCGCA ACATTCCTGC CAAGGCCTAC
CATGCCGGAA TGGCGTCCGA GGTCAGGCAG GCTATCCAGC ATGACTTCAT GTCCGGAAAG
CAAGAGATCA TCGTCGCGAC CATTGCCTTC GGGATGGGGA TAGATAAGAG CGATATCCGT
TTTGTGGCGC ATTATGACCT GCCTAAATCC ATCGAAAACT ACGCCCAGGA GATTGGTCGT
GCGGGACGGG ATGGATTGAA CTCAGATTGT TTAGTTCTCG CCAATGCCGA TAACCTGAGC
ACCCTGGAGA ACTTTGTTTA TGGTGATACG CCCGAGCCCG GCGCCATCAG CGTTGTTCTC
GATGAGATCC TCAAAGCGGC AGAGCTGAGC TCTGGACAAG CTCAGTGGGA GGTCGTACTT
AACAGTTTAT CTAATCAGTC CAATATCCGG CCCCTGTCTT TAAAAACACT CTTGGTTTAC
CTCGAACTTC TGAACATTAT TAAGCCGACA TACAGCTATT TTGCAGAGTA TAAGTTTAAA
TACCTTATGC CTGAGGCACA GATAATTGAG TTTTTTAAAG AGGAGAGGAG AGACTTTATC
CGGGCCATAT TTACCAGCGC TGACAGGGCA AAGATATGGT CCAGTGTGAA CTTCGATAAA
CTGAATACTG CTTATGCCAG TGACCGTCAG CGGGTATTGA AAGCAATCAA CTACCTTGAT
GAAAAGGGAA TGATTGAGCT GCAAAGTAAA CAGATGACTC AGGTATATCA AATTCTCGAT
ACCCGGTTTG ACCGGGAACA GCTACAAATA TCCCTGTTCG AACGCTTCAA TGGTAAAGAG
ACCAGTGAAG TAAAACGCAT TAATCAGTTG ATTGGCTTAT TTACATCGGA TCAATGTCTG
AGTCATCAGC TGGCACACTA CTTTGCCGAC GAGCAGATGA CTCAAAATTG TGGTACCTGT
TCGGTTTGCC GAGGCGAGCA GGCGGTGCTA CCTCCAATCC CCTATCTAAA ACCTCTCGAT
GAGATAGATT TTAATCAAAT TACTGCTGAG GCTGTGTCTA AGTTAGGTAA GGCATCCAGT
ATCGTTCTGG TGTCGCGTTT TTTGTGTGGT CTAACGACGC CAATCTTCAC TAAGTTGAAG
TTACGAGCCT GCAGAGGGTT CGCTAGTTTA GAGAAGTACC GCTTCAGTGA AGTGAAACTC
TGGGTTCAAT CACACCTGAG TGACTAG
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| Protein sequence | MSQSPHALLQ AHFGFSDFRS GQYDVINHVL QGHSAAAIFP TGSGKSLCYQ LPAIALPNLT
LVVSPLLALI QDQLSFLQSK GINAASIDSS QSREQTLDVM RGVRQGEVKI LMISVERLNN
ERFRQFISEV PVSMLVVDEA HCISEWGHNF RPDYLKLPRY RKELNIPQTL LLTATATPKV
IEDMGSKFGI APEKVTLTGF YRPNLHLNVK GVASRDKVDE LALWLSSRVH QSGIIYVTLQ
QTAEFVAEKL SQRNIPAKAY HAGMASEVRQ AIQHDFMSGK QEIIVATIAF GMGIDKSDIR
FVAHYDLPKS IENYAQEIGR AGRDGLNSDC LVLANADNLS TLENFVYGDT PEPGAISVVL
DEILKAAELS SGQAQWEVVL NSLSNQSNIR PLSLKTLLVY LELLNIIKPT YSYFAEYKFK
YLMPEAQIIE FFKEERRDFI RAIFTSADRA KIWSSVNFDK LNTAYASDRQ RVLKAINYLD
EKGMIELQSK QMTQVYQILD TRFDREQLQI SLFERFNGKE TSEVKRINQL IGLFTSDQCL
SHQLAHYFAD EQMTQNCGTC SVCRGEQAVL PPIPYLKPLD EIDFNQITAE AVSKLGKASS
IVLVSRFLCG LTTPIFTKLK LRACRGFASL EKYRFSEVKL WVQSHLSD
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